Evidence map›Paper›PMID 23815809›Full record

ArticleThe journal of physical chemistry. B2013

Kinetic modeling of the X-ray-induced damage to a metalloprotein.

Katherine M Davis, Irina Kosheleva, Robert W Henning, Gerald T Seidler, Yulia Pushkar

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Time-resolved Mn KThe Journal of biological chemistry · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Pink-beam serial crystallography.Nature communications · 2017
    Article
  7. High-density grids for efficient data collection from multiple crystals.Acta crystallographica. Section D, Structural biology · 2016
    Article
  8. Article
  9. Review
  10. Goniometer-based femtosecond crystallography with X-ray free electron lasers.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  11. Article
  12. Assembly of nonheme Mn/Fe active sites in heterodinuclear metalloproteins.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2014
    Review
  13. Diffraction before destruction.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2014
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Katherine M DavisDepartment of Physics, Purdue University, West Lafayette, Indiana 47907, USA.
Irina Kosheleva
Robert W Henning
Gerald T Seidler
Yulia Pushkar
Purdue University West Lafayette · USUniversity of Chicago · USUniversity of Washington · US

Funding

X-RAY STUDY OF HORMONE-RECEPTOR AND PROTEIN-ANTIBODY COMPLEXESP41RR007707 · NCRR · UNIVERSITY OF CHICAGO · PI YANG, XIANGZHONG · 2002 to 2011
$17.3M
BioCARS: A Synchrotron Structure Biology ResourceR24GM111072 · NIGMS · UNIVERSITY OF CHICAGO · PI MOFFAT, JOHN KEITH · 2013 to 2016
$2.3M
BioCARS: A Synchroton Structural Biology ResourceP41GM103543 · NIGMS · UNIVERSITY OF CHICAGO · PI MOFFAT, JOHN KEITH · 2012 to 2012
$1.1M
NCRR NIH HHS 5P41RR007707NCRR NIH HHS P41 RR007707NIGMS NIH HHS 8P41GM103543NIGMS NIH HHS P41 GM103543NIGMS NIH HHS R24 GM111072
6 · The paper itself

Abstract

It is well-known that biological samples undergo X-ray-induced degradation. One of the fastest occurring X-ray-induced processes involves redox modifications (reduction or oxidation) of redox-active cofactors in proteins. Here we analyze room-temperature data on the photoreduction of Mn ions in the oxygen-evolving complex (OEC) of photosystem II, one of the most radiation damage-sensitive proteins and a key constituent of natural photosynthesis in plants, green algae, and cyanobacteria. Time-resolved X-ray emission spectroscopy with wavelength-dispersive detection was used to collect data on the progression of X-ray-induced damage. A kinetic model was developed to fit experimental results, and the rate constant for the reduction of OEC Mn(III) and Mn(IV) ions by solvated electrons was determined. From this model, the possible kinetics of X-ray-induced damage at a variety of experimental conditions, such as different rates of dose deposition as well as different excitation wavelengths, can be inferred. We observed a trend of increasing dosage threshold prior to the onset of X-ray-induced damage with increasing rates of dose deposition. This trend suggests that experimentation with higher rates of dose deposition is beneficial for measurements of biological samples sensitive to radiation damage, particularly at pink beam and X-ray free electron laser sources.

Indexed as

CyanobacteriaIonsKineticsManganeseOxidation-ReductionOxygenPhotosystem II Protein ComplexSpectrometry, X-Ray EmissionTemperatureX-RaysIonsManganeseOxygenPhotosystem II Protein Complex

Identifiers

PMID23815809
PMCPMC3897202
OpenAlexW1969040861

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.