Evidence map›Paper›PMID 23812713›Full record

ArticleScience (New York, N.Y.)2013

Intrinsically disordered protein threads through the bacterial outer-membrane porin OmpF.

Nicholas G Housden, Jonathan T S Hopper, Natalya Lukoyanova, David Rodriguez-Larrea, Justyna A Wojdyla, Alexander Klein, Renata Kaminska, Hagan Bayley, Helen R Saibil, Carol V Robinson and 1 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
16.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 120 citations in OpenAlex.

  1. Article
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  7. Tunable force transduction through theProceedings of the National Academy of Sciences of the United States of America · 2023
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11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Nicholas G HousdenDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.
Jonathan T S Hopper
Natalya Lukoyanova
David Rodriguez-Larrea
Justyna A Wojdyla
Alexander Klein
Renata Kaminska
Hagan Bayley
Helen R Saibil
Carol V Robinson
Colin Kleanthous
University of Oxford · GBBirkbeck, University of London · GB

Funding

Single-Molecule DNA Sequencing with Engineered NanoporesR01HG003709 · NHGRI · SCRIPPS RESEARCH INSTITUTE, THE · PI GHADIRI, M. REZA · 2005 to 2017
$13.2M
Biotechnology and Biological Sciences Research Council BB/D008573/1Biotechnology and Biological Sciences Research Council BB/D00873/1Biotechnology and Biological Sciences Research Council BB/G020671/1European Research Council 294408NHGRI NIH HHS R01 HG003709NHGRI NIH HHS R0I HG003709Wellcome Trust 079605Wellcome Trust 079605/2/06/2Wellcome Trust 082045
6 · The paper itself

Abstract

Porins are β-barrel outer-membrane proteins through which small solutes and metabolites diffuse that are also exploited during cell death. We have studied how the bacteriocin colicin E9 (ColE9) assembles a cytotoxic translocon at the surface of Escherichia coli that incorporates the trimeric porin OmpF. Formation of the translocon involved ColE9's unstructured N-terminal domain threading in opposite directions through two OmpF subunits, capturing its target TolB on the other side of the membrane in a fixed orientation that triggers colicin import. Thus, an intrinsically disordered protein can tunnel through the narrow pores of an oligomeric porin to deliver an epitope signal to the cell to initiate cell death.

Indexed as

Cell MembraneColicinsEscherichia coliEscherichia coli ProteinsPeriplasmic ProteinsPorinsProtein MultimerizationProtein Structure, TertiaryProtein TransportColicinsEscherichia coli ProteinsimmE9 protein, E coliOmpF proteinPeriplasmic ProteinsPorinstolB protein, E coli

Identifiers

PMID23812713
PMCPMC3856478
OpenAlexW2148708097

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.