Evidence map›Paper›PMID 23811600›Full record

ArticleNature biotechnology2013

Chaperones as thermodynamic sensors of drug-target interactions reveal kinase inhibitor specificities in living cells.

Mikko Taipale, Irina Krykbaeva, Luke Whitesell, Sandro Santagata, Jianming Zhang, Qingsong Liu, Nathanael S Gray, Susan Lindquist

Open access · greenAbstract read
In one paragraph

Article in Nature biotechnology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 137 citations in OpenAlex.

  1. Article
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  7. Factors affecting protein recovery during Hsp40 affinity profiling.Analytical and bioanalytical chemistry · 2024
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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Mikko TaipaleWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Irina Krykbaeva
Luke Whitesell
Sandro Santagata
Jianming Zhang
Qingsong Liu
Nathanael S Gray
Susan Lindquist
Whitehead Institute for Biomedical Research · USDana-Farber Cancer Institute · USHarvard University · US

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MATTHEW G. VANDER HEIDEN · 1985 to 2026
$93.9M
Discovery Pipeline (2 of 4)RL1CA133834 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GOLUB, TODD R. · 2007 to 2011
$9.9M
Driving Medical Projects (4 of 4)RL1GM084437 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SCOLNICK, EDWARD MARK · 2007 to 2011
$5.9M
Target ID (3 of 4)RL1HG004671 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SCHREIBER, STUART L · 2007 to 2011
$5.8M
Genomics Based Drug Discovery (1 of 4)UL1DE019585 · NIDCR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SCHERER, CHRISTINA ANN · 2008 to 2011
$1.5M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA014051NCI NIH HHS RL1 CA133834NCI NIH HHS RL1-CA133834NHGRI NIH HHS RL1 HG004671NHGRI NIH HHS RL1-HG004671NIDCR NIH HHS UL1 DE019585NIDCR NIH HHS UL1-DE019585NIGMS NIH HHS RL1 GM084437NIGMS NIH HHS RL1-GM084437
6 · The paper itself

Abstract

The interaction between the HSP90 chaperone and its client kinases is sensitive to the conformational status of the kinase, and stabilization of the kinase fold by small molecules strongly decreases chaperone interaction. Here we exploit this observation and assay small-molecule binding to kinases in living cells, using chaperones as 'thermodynamic sensors'. The method allows determination of target specificities of both ATP-competitive and allosteric inhibitors in the kinases' native cellular context in high throughput. We profile target specificities of 30 diverse kinase inhibitors against >300 kinases. Demonstrating the value of the assay, we identify ETV6-NTRK3 as a target of the FDA-approved drug crizotinib (Xalkori). Crizotinib inhibits proliferation of ETV6-NTRK3-dependent tumor cells with nanomolar potency and induces the regression of established tumor xenografts in mice. Finally, we show that our approach is applicable to other chaperone and target classes by assaying HSP70/steroid hormone receptor and CDC37/kinase interactions, suggesting that chaperone interactions will have broad application in detecting drug-target interactions in vivo.

Indexed as

Drug InteractionsAnimalsCell Cycle ProteinsCrizotinibDrug ApprovalETS Translocation Variant 6 ProteinHSP90 Heat-Shock ProteinsHumansMiceMolecular ChaperonesNeoplasmsPhosphotransferasesProtein BindingProtein Kinase InhibitorsProto-Oncogene Proteins c-etsPyrazolesCell Cycle ProteinsCrizotinibETS Translocation Variant 6 ProteinHSP90 Heat-Shock ProteinsMolecular ChaperonesPhosphotransferasesProtein Kinase InhibitorsProto-Oncogene Proteins c-etsPyrazolesPyridinesReceptor, trkCRepressor Proteins

Identifiers

PMID23811600
PMCPMC3774174
OpenAlexW2106064593

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.