Evidence map›Paper›PMID 23811393›Full record

ArticleNeuroscience2013

Status epilepticus triggers early and late alterations in brain-derived neurotrophic factor and NMDA glutamate receptor Grin2b DNA methylation levels in the hippocampus.

R Ryley Parrish, A J Albertson, S C Buckingham, J J Hablitz, K L Mascia, W Davis Haselden, F D Lubin

Open access · greenAbstract read
In one paragraph

Article in Neuroscience, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 105 citations in OpenAlex.

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  10. Review
  11. Article
  12. Article
  13. Applications for Deep Learning in Epilepsy Genetic Research.International journal of molecular sciences · 2023
    Review
  14. Article
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  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

R Ryley ParrishEvelyn F. McKnight Brain Institute, Department of Neurobiology, University of Alabama at Birmingham, 1825 University Boulevard, Birmingham, AL 35294, USA. Electronic address: rparris1@uab.edu.
A J AlbertsonEvelyn F. McKnight Brain Institute, Department of Neurobiology, University of Alabama at Birmingham, 1825 University Boulevard, Birmingham, AL 35294, USA. Electronic address: asher693@uab.edu.
S C BuckinghamEvelyn F. McKnight Brain Institute, Department of Neurobiology, University of Alabama at Birmingham, 1825 University Boulevard, Birmingham, AL 35294, USA. Electronic address: sbucking@uab.edu.
J J HablitzEvelyn F. McKnight Brain Institute, Department of Neurobiology, University of Alabama at Birmingham, 1825 University Boulevard, Birmingham, AL 35294, USA. Electronic address: Hablitz@nrc.uab.edu.
K L MasciaEvelyn F. McKnight Brain Institute, Department of Neurobiology, University of Alabama at Birmingham, 1825 University Boulevard, Birmingham, AL 35294, USA. Electronic address: Kmascia@uab.edu.
W Davis HaseldenEvelyn F. McKnight Brain Institute, Department of Neurobiology, University of Alabama at Birmingham, 1825 University Boulevard, Birmingham, AL 35294, USA. Electronic address: haselden@uab.edu.
F D LubinEvelyn F. McKnight Brain Institute, Department of Neurobiology, University of Alabama at Birmingham, 1825 University Boulevard, Birmingham, AL 35294, USA. Electronic address: flubin@uab.edu.
University of Alabama at Birmingham · US

Funding

UAB MENTAL RETARDATION RESEARCH CENTER (MRRC)P30HD038985 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI POZZO-MILLER, LUCAS D · 2000 to 2012
$8.6M
Chromatin remodeling mechanisms of gene transcription in memoryR01MH097909 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LUBIN, FARAH DOMINIQUE · 2012 to 2016
$1.9M
Epigenetic Mechanisms of Gene Regulation in Long-Term Memory FormationR00MH082106 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LUBIN, FARAH DOMINIQUE · 2009 to 2011
$737k
Chromatin Remodeling Mechanism of Gene Transcription in MemoryR56MH097909 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LUBIN, FARAH DOMINIQUE · 2018 to 2018
$502k
Epigenetic Mechanisms of Gene Regulation in Long-Term Memory FormationK99MH082106 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LUBIN, FARAH DOMINIQUE · 2008 to 2008
$84k
NICHD NIH HHS P30-HD38985NIMH NIH HHS K99 MH082106NIMH NIH HHS MH082106NIMH NIH HHS MH097909NIMH NIH HHS R00 MH082106NIMH NIH HHS R01 MH097909NIMH NIH HHS R56 MH097909
6 · The paper itself

Abstract

Status epilepticus (SE) triggers abnormal expression of genes in the hippocampus, such as glutamate receptor subunit epsilon-2 (Grin2b/Nr2b) and brain-derived neurotrophic factor (Bdnf), that is thought to occur in temporal lobe epilepsy (TLE). We examined the underlying DNA methylation mechanisms and investigated whether these mechanisms contribute to the expression of these gene targets in the epileptic hippocampus. Experimental TLE was provoked by kainic acid-induced SE. Bisulfite sequencing analysis revealed increased Grin2b/Nr2b and decreased Bdnf DNA methylation levels that corresponded to decreased Grin2b/Nr2b and increased Bdnf mRNA and protein expression in the epileptic hippocampus. Blockade of DNA methyltransferase (DNMT) activity with zebularine decreased global DNA methylation levels and reduced Grin2b/Nr2b, but not Bdnf, DNA methylation levels. Interestingly, we found that DNMT blockade further decreased Grin2b/Nr2b mRNA expression whereas GRIN2B protein expression increased in the epileptic hippocampus, suggesting that a posttranscriptional mechanism may be involved. Using chromatin immunoprecipitation analysis we found that DNMT inhibition restored the decreases in AP2alpha transcription factor levels at the Grin2b/Nr2b promoter in the epileptic hippocampus. DNMT inhibition increased field excitatory postsynaptic potential in hippocampal slices isolated from epileptic rats. Electroencephalography (EEG) monitoring confirmed that DNMT inhibition did not significantly alter the disease course, but promoted the latency to seizure onset or SE. Thus, DNA methylation may be an early event triggered by SE that persists late into the epileptic hippocampus to contribute to gene expression changes in TLE.

Indexed as

DNA MethylationAnimalsBrain-Derived Neurotrophic FactorCytidineDNA (Cytosine-5-)-MethyltransferasesElectroencephalographyEpilepsy, Temporal LobeHippocampusKainic AcidMaleRatsReceptors, N-Methyl-D-AspartateSeizuresStatus EpilepticusTranscription Factor AP-2Brain-Derived Neurotrophic FactorCytidineDNA (Cytosine-5-)-MethyltransferasesKainic AcidNR2B NMDA receptorpyrimidin-2-one beta-ribofuranosideReceptors, N-Methyl-D-AspartateTranscription Factor AP-2BdnfDNA demethylationepigeneticsepilepsyGrin2b/Nr2bseizures

Identifiers

PMID23811393
PMCPMC3830613
OpenAlexW2001285906

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.