ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2013
The auxin response factor transcription factor family in soybean: genome-wide identification and expression analyses during development and water stress.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.
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83 citing papers in PubMed, 209 citations in OpenAlex.
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- Comprehensive genome-wide analysis of ARF transcription factors in orchardgrass (Dactylis glomerata): the positive regulatory role of DgARF7 in drought resistance.BMC genomics · 2025Article
- Systematic analysis of the ARF gene family in Fagopyrum dibotrys and its potential roles in stress tolerance.Genetica · 2024Article
- Genome-Wide Identification, Expression, and Interaction Analysis of the Auxin Response Factor andInternational journal of molecular sciences · 2024Article
- ThePhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Genome-wide identification and expression analysis of ARF gene family in embryonic development of Korean pine (Pinus koraiensis).BMC plant biology · 2024Article
- Identification of ARF genes in Cucurbita pepo L and analysis of expression patterns, and functional analysis of CpARF22 under drought, salt stress.BMC genomics · 2024Article
- Enigmatic role of auxin response factors in plant growth and stress tolerance.Frontiers in plant science · 2024Review
- Auxin and abiotic stress responses.Journal of experimental botany · 2023Review
- Genome-Wide Identification and Expression Analysis of Auxin Response Factor (ARF) Gene Family inPlants (Basel, Switzerland) · 2023Article
- Molecular mechanism analysis of ZmRL6 positively regulating drought stress tolerance in maize.Stress biology · 2023Article
- Genome-wide investigation of ARF transcription factor gene family and its responses to abiotic stress in Coix (Coix lacryma-jobi L.).Protoplasma · 2023Article
- The Knockdown ofPlants (Basel, Switzerland) · 2023Article
- LkARF7 and LkARF19 overexpression promote adventitious root formation in a heterologous poplar model by positively regulating LkBBM1.Communications biology · 2023Article
- Identification and Molecular Characterization of RWP-RK Transcription Factors in Soybean.Genes · 2023Article
23 more citing papers are in PubMed but not listed here.
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11 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In plants, the auxin response factor (ARF) transcription factors play important roles in regulating diverse biological processes, including development, growth, cell division and responses to environmental stimuli. An exhaustive search of soybean genome revealed 51 GmARFs, many of which were formed by genome duplications. The typical GmARFs (43 members) contain a DNA-binding domain, an ARF domain and an auxin/indole acetic acid (AUX/IAA) dimerization domain, whereas the remaining eight members lack the dimerization domain. Phylogenetic analysis of the ARFs from soybean and Arabidopsis revealed both similarity and divergence between the two ARF families, as well as enabled us to predict the functions of the GmARFs. Using quantitative real-time polymerase chain reaction (qRT-PCR) and available soybean Affymetrix array and Illumina transcriptome sequence data, a comprehensive expression atlas of GmARF genes was obtained in various organs and tissues, providing useful information about their involvement in defining the precise nature of individual tissues. Furthermore, expression profiling using qRT-PCR and microarray data revealed many water stress-responsive GmARFs in soybean, albeit with different patterns depending on types of tissues and/or developmental stages. Our systematic analysis has identified excellent tissue-specific and/or stress-responsive candidate GmARF genes for in-depth in planta functional analyses, which would lead to potential applications in the development of genetically modified soybean cultivars with enhanced drought tolerance.
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