Evidence map›Paper›PMID 23810382›Full record

ArticleAmerican journal of human genetics2013

Mutations in PIK3R1 cause SHORT syndrome.

David A Dyment, Amanda C Smith, Diana Alcantara, Jeremy A Schwartzentruber, Lina Basel-Vanagaite, Cynthia J Curry, I Karen Temple, William Reardon, Sahar Mansour, Mushfequr R Haq and 10 more

Open access · hybridAbstract read
In one paragraph

Article in American journal of human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed, 3 pooled it
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 3 syntheses or guidelines pooled it, 196 citations in OpenAlex.

  1. Guideline
  2. Pooled it
  3. Pooled it
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. The metabolically protective energy expenditure increase ofAmerican journal of physiology. Endocrinology and metabolism · 2025
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. TargetingHeliyon · 2024
    Article
  20. Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 12 institutions in 5 countries.

David A DymentDepartment of Genetics, Children's Hospital of Eastern Ontario, Ottawa, ON K1H 8L1, Canada. ddyment@cheo.on.ca
Amanda C Smith
Diana Alcantara
Jeremy A Schwartzentruber
Lina Basel-Vanagaite
Cynthia J Curry
I Karen Temple
William Reardon
Sahar Mansour
Mushfequr R Haq
Rodney Gilbert
Ordan J Lehmann
Megan R Vanstone
Chandree L Beaulieu
FORGE Canada Consortium
Jacek Majewski
Dennis E Bulman
Mark O'Driscoll
Kym M Boycott
A Micheil Innes
Children's Hospital of Eastern Ontario · CAMcGill University and Génome Québec Innovation Centre · CASouthampton Children's Hospital · GBUniversity of Ottawa · CAUniversity of Sussex · GBOur Lady's Hospital · IESchneider Children's Medical Center · ILSt George's Hospital · GBUniversity of Alberta · CAUniversity of Calgary · CAUniversity of California, San Francisco · USUniversity of Southampton · GB

Funding

Cancer Research UK 15394CIHRMedical Research Council
6 · The paper itself

Abstract

SHORT syndrome is a rare, multisystem disease characterized by short stature, anterior-chamber eye anomalies, characteristic facial features, lipodystrophy, hernias, hyperextensibility, and delayed dentition. As part of the FORGE (Finding of Rare Disease Genes) Canada Consortium, we studied individuals with clinical features of SHORT syndrome to identify the genetic etiology of this rare disease. Whole-exome sequencing in a family trio of an affected child and unaffected parents identified a de novo frameshift insertion, c.1906_1907insC (p.Asn636Thrfs*18), in exon 14 of PIK3R1. Heterozygous mutations in exon 14 of PIK3R1 were subsequently identified by Sanger sequencing in three additional affected individuals and two affected family members. One of these mutations, c.1945C>T (p.Arg649Trp), was confirmed to be a de novo mutation in one affected individual and was also identified and shown to segregate with the phenotype in an unrelated family. The other mutation, a de novo truncating mutation (c.1971T>G [p.Tyr657*]), was identified in another affected individual. PIK3R1 is involved in the phosphatidylinositol 3 kinase (PI3K) signaling cascade and, as such, plays an important role in cell growth, proliferation, and survival. Functional studies on lymphoblastoid cells with the PIK3R1 c.1906_1907insC mutation showed decreased phosphorylation of the downstream S6 target of the PI3K-AKT-mTOR pathway. Our findings show that PIK3R1 mutations are the major cause of SHORT syndrome and suggest that the molecular mechanism of disease might involve downregulation of the PI3K-AKT-mTOR pathway.

Indexed as

Frameshift MutationAdolescentChildChild, PreschoolClass Ia Phosphatidylinositol 3-KinaseDNA Mutational AnalysisExomeExonsFemaleGenetic Carrier ScreeningGrowth DisordersHeterozygoteHumansHypercalcemiaInfant, NewbornMaleClass Ia Phosphatidylinositol 3-Kinase

Identifiers

PMID23810382
PMCPMC3710754
OpenAlexW1983226769

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.