ArticlePlanta2013
Deep sequencing discovery of novel and conserved microRNAs in wild type and a white-flesh mutant strawberry.
Article in Planta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
18 citing papers in PubMed, 52 citations in OpenAlex.
- MicroRNA162 regulates stomatal conductance in response to low night temperature stressFrontiers in plant science · 2023Article
- Identification and characterization of miRNAs and PHAS loci related to the early development of the embryo and endosperm in Fragaria × ananassa.BMC genomics · 2022Article
- Alterations of Phenylpropanoid Biosynthesis Lead to the Natural Formation of Pinkish-Skinned and White-Fleshed Strawberry (International journal of molecular sciences · 2022Article
- miR390-tasiRNA3-ARF4 pathway is involved in regulating flowering time in woodland strawberry.Plant cell reports · 2022Article
- Effect of Exogenous Auxin Treatment on Cell Wall Polymers of Strawberry Fruit.International journal of molecular sciences · 2021Article
- Comparative analysis of theOpen life sciences · 2021Article
- MicroRNA-Mediated Responses to Chromium Stress Provide Insight Into Tolerance Characteristics ofFrontiers in plant science · 2021Article
- Integrated sRNAome and RNA-Seq analysis reveals miRNA effects on betalain biosynthesis in pitaya.BMC plant biology · 2020Article
- Comparative transcriptome analysis uncovers the regulatory functions of long noncoding RNAs in fruit development and color changes ofHorticulture research · 2019Article
- Identification of browning-related microRNAs and their targets reveals complex miRNA-mediated browning regulatory networks in Luffa cylindrica.Scientific reports · 2018Article
- Identification and characterization of known and novel microRNAs in strawberry fruits induced by Botrytis cinerea.Scientific reports · 2018Article
- Expansion of Capsicum annuum fruit is linked to dynamic tissue-specific differential expression of miRNA and siRNA profiles.PloS one · 2018Article
- Identification of MicroRNAs and Their Targets Associated with Fruit-Bagging and Subsequent Sunlight Re-exposure in the "Granny Smith" Apple Exocarp Using High-Throughput Sequencing.Frontiers in plant science · 2016Article
- Transcriptome profiling of postharvest strawberry fruit in response to exogenous auxin and abscisic acid.Planta · 2016Article
- Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development.BMC genomics · 2015Article
- Transcriptome-wide analysis of chromium-stress responsive microRNAs to explore miRNA-mediated regulatory networks in radish (Raphanus sativus L.).Scientific reports · 2015Article
- Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry.Plant physiology · 2015Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression by base pairing to mRNA target sequences, and play crucial roles in plant development and stress responses. The knowledge on post-transcriptional regulation by miRNAs in strawberry is rather limited so far. In order to understand the role of miRNA in the molecular control during strawberry fruit development, small RNA libraries were constructed from fruits at the turning stage of strawberry cultivar 'Sachinoka' and its white-flesh mutant by using the Solexa platform. One hundred and twenty conserved miRNAs belonging to 27 miRNA families and 33 putative novel strawberry miRNAs were identified in both libraries. Their target genes were predicted using the Fragaria vesca genome. Nine of all miRNAs showed significant expression differences between two types of samples. Four miRNAs were up-regulated and five were down-regulated in white-flesh mutant. The sequencing results were partially validated by quantitative RT-PCR. Among them, the expression of miR399a shows the biggest change between the two samples. The prediction of its target gene showed that miR399 may play an important role in phosphate homeostasis of strawberry fruits. Furthermore, we deduce that the expression of miR399 has negative correlation with the content of sugars.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.