Evidence map›Paper›PMID 23806335›Full record

ArticleMolecular cell2013

The ZFP-1(AF10)/DOT-1 complex opposes H2B ubiquitination to reduce Pol II transcription.

Germano Cecere, Sebastian Hoersch, Morten B Jensen, Shiv Dixit, Alla Grishok

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Analysis ofComputational and structural biotechnology journal · 2024
    Article
  6. An E2 ubiquitin-conjugating enzyme links diubiquitinated H2B to H3K27M oncohistone function.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. DOT-1.1 (DOT1L) deficiency inBBA advances · 2023
    Article
  13. Article
  14. Article
  15. Connecting the DOTs on Cell Identity.Frontiers in cell and developmental biology · 2022
    Review
  16. DOT1L complex regulates transcriptional initiation in human erythroleukemic cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Cells · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Germano CecereDepartment of Biochemistry and Molecular Biophysics, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.
Sebastian Hoersch
Morten B Jensen
Shiv Dixit
Alla Grishok
Columbia University · USMassachusetts Institute of Technology · USUniversity of North Carolina at Chapel Hill · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Investigating the Potential of Endogenous RNAi in Mediating Adaptation to EnvironDP2OD006412 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GRISHOK, ALLA · 2009 to 2009
$2.4M
NIH HHS 1 DP2OD006412-01NIH HHS DP2 OD006412NIH HHS P40 OD010440
6 · The paper itself

Abstract

The inhibition of transcriptional elongation plays an important role in gene regulation in metazoans, including C. elegans. Here, we combine genomic and biochemical approaches to dissect a role of ZFP-1, the C. elegans AF10 homolog, in transcriptional control. We show that ZFP-1 and its interacting partner DOT-1.1 have a global role in negatively modulating the level of polymerase II (Pol II) transcription on essential widely expressed genes. Moreover, the ZFP-1/DOT-1.1 complex contributes to progressive Pol II pausing on essential genes during development and to rapid Pol II pausing during stress response. The slowing down of Pol II transcription by ZFP-1/DOT-1.1 is associated with an increase in H3K79 methylation and a decrease in H2B monoubiquitination, which promotes transcription. We propose a model wherein the recruitment of ZFP-1/DOT-1.1 and deposition of H3K79 methylation at highly expressed genes initiates a negative feedback mechanism for the modulation of their expression.

Indexed as

Transcription, GeneticUbiquitinationAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsChromatin ImmunoprecipitationDNA Polymerase IIGene Expression RegulationGene Knockdown TechniquesGenes, HelminthHeat-Shock ResponseHistone-Lysine N-MethyltransferaseHistonesPromoter Regions, GeneticProtein TransportRNA InterferenceCaenorhabditis elegans ProteinsDNA Polymerase IIDOT-1.1 protein, C elegansHistone-Lysine N-MethyltransferaseHistonesTranscription FactorsZfp-1 protein, C elegans

Identifiers

PMID23806335
PMCPMC3784254
OpenAlexW2094115543

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.