Evidence map›Paper›PMID 23805300›Full record

ArticlePloS one2013

Identification and Validation of a Putative Polycomb Responsive Element in the Human Genome.

Hemant Bengani, Shweta Mendiratta, Jayant Maini, Dasari Vasanthi, Hina Sultana, Mohsen Ghasemi, Jasmine Ahluwalia, Sowmya Ramachandran, Rakesh K Mishra, Vani Brahmachari

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Defective Astrocyte Maturation Drives Cerebellar Neuroinflammation and Degeneration.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Hemant BenganiDr. B. R. Ambedkar Centre for Biomedical Research, University of Delhi, Delhi, India.
Shweta Mendiratta
Jayant Maini
Dasari Vasanthi
Hina Sultana
Mohsen Ghasemi
Jasmine Ahluwalia
Sowmya Ramachandran
Rakesh K Mishra
Vani Brahmachari
University of Delhi · INAmbedkar University Delhi · INCentre for Cellular and Molecular Biology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetic cellular memory mechanisms that involve polycomb and trithorax group of proteins are well conserved across metazoans. The cis-acting elements interacting with these proteins, however, are poorly understood in mammals. In a directed search we identified a potential polycomb responsive element with 25 repeats of YY1 binding motifthatwe designate PRE-PIK3C2B as it occurs in the first intron of human PIK3C2B gene. It down regulates reporter gene expression in HEK cells and the repression is dependent on polycomb group of proteins (PcG). We demonstrate that PRE-PIK3C2B interacts directly with YY1 in vitro and recruits PRC2 complex in vivo. The localization of PcG proteins including YY1 to PRE-PIK3C2B in HEK cells is decreased on knock-down of either YY1 or SUZ12. Endogenous PRE-PIK3C2B shows bivalent marking having H3K27me3 and H3K4me3 for repressed and active state respectively. In transgenic Drosophila, PRE-PIK3C2B down regulates mini-white expression, exhibits variegation and pairing sensitive silencing (PSS), which has not been previously demonstrated for mammalian PRE. Taken together, our results strongly suggest that PRE-PIK3C2B functions as a site of interaction for polycomb proteins.

Indexed as

AnimalsAnimals, Genetically ModifiedClass II Phosphatidylinositol 3-KinasesDrosophilaGenome, HumanHEK293 CellsHumansIntronsNeoplasm ProteinsPolycomb Repressive Complex 2Response ElementsTranscription FactorsYY1 Transcription FactorClass II Phosphatidylinositol 3-KinasesNeoplasm ProteinsPIK3C2B protein, humanPolycomb Repressive Complex 2SUZ12 protein, humanTranscription FactorsYY1 protein, humanYY1 Transcription Factor

Identifiers

PMID23805300
PMCPMC3689693
OpenAlexW2019479916

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.