ArticleFrontiers in plant science2013
A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar.
Article in Frontiers in plant science, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- Genome-Wide Association Study to Identify Possible Candidate Genes of Snap Bean Leaf and Pod Color.Genes · 2023Article
- Identification and Characterization of Common Bean (Plants (Basel, Switzerland) · 2023Article
- Screening populations for copy number variation using genotyping-by-sequencing: a proof of concept using soybean fast neutron mutants.BMC genomics · 2019Article
- FNBtools: A Software to Identify Homozygous Lesions in Deletion Mutant Populations.Frontiers in plant science · 2018Article
- Identification of Substitutions and Small Insertion-Deletions Induced by Carbon-Ion Beam Irradiation inFrontiers in plant science · 2017Article
- Genomic Analysis of Storage Protein Deficiency in Genetically Related Lines of Common Bean (Phaseolus vulgaris).Frontiers in plant science · 2016Article
- Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean.Genetics · 2014Article
- Legume genomics: understanding biology through DNA and RNA sequencing.Annals of botany · 2014Review
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11 authors.
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Abstract
A small fast neutron (FN) mutant population has been established from Phaseolus vulgaris cv. Red Hawk. We leveraged the available P. vulgaris genome sequence and high throughput next generation DNA sequencing to examine the genomic structure of five P. vulgaris cv. Red Hawk FN mutants with striking visual phenotypes. Analysis of these genomes identified three classes of structural variation (SV); between cultivar variation, natural variation within the FN mutant population, and FN induced mutagenesis. Our analyses focused on the latter two classes. We identified 23 large deletions (>40 bp) common to multiple individuals, illustrating residual heterogeneity and regions of SV within the common bean cv. Red Hawk. An additional 18 large deletions were identified in individual mutant plants. These deletions, ranging in size from 40 bp to 43,000 bp, are potentially the result of FN mutagenesis. Six of the 18 deletions lie near or within gene coding regions, identifying potential candidate genes causing the mutant phenotype.
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