Evidence map›Paper›PMID 23805044›Full record

ArticleMolecular vision2013

RIT2, a neuron-specific small guanosine triphosphatase, is expressed in retinal neuronal cells and its promoter is modulated by the POU4 transcription factors.

Ling Zhang, Karl Wahlin, Yuanyuan Li, Tomohiro Masuda, Zhiyong Yang, Donald J Zack, Noriko Esumi

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Association betweenBioMed research international · 2023
    Pooled it
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  11. Genetic association study between RIT2 and Parkinson's disease in a Han Chinese population.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2017
    Article
  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ling ZhangThe Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Karl Wahlin
Yuanyuan Li
Tomohiro Masuda
Zhiyong Yang
Donald J Zack
Noriko Esumi
Johns Hopkins University · USJohns Hopkins Medicine · US

Funding

Wilmer Core Grant for Vision ResearchP30EY001765 · NEI · JOHNS HOPKINS UNIVERSITY · PI Jiang Qian · 1985 to 2026
$22.1M
REGULATION OF RHODOPSIN GENE EXPRESSIONR01EY009769 · NEI · JOHNS HOPKINS UNIVERSITY · PI ZACK, DONALD J. · 1992 to 2014
$8.1M
Molecular Mechanisms Regulating VMD2 ExpressionR01EY016398 · NEI · JOHNS HOPKINS UNIVERSITY · PI ESUMI, NORIKO · 2006 to 2009
$643k
ChIP-ChIP-Chip: A New Tool To Study RPE Gene RegulationR03EY015410 · NEI · JOHNS HOPKINS UNIVERSITY · PI ESUMI, NORIKO · 2005 to 2007
$481k
NEI NIH HHS P30 EY001765NEI NIH HHS P30EY001765NEI NIH HHS R01 EY009769NEI NIH HHS R01EY009769NEI NIH HHS R01 EY016398NEI NIH HHS R01EY016398NEI NIH HHS (R03EY015410NEI NIH HHS R03 EY015410
6 · The paper itself

Abstract

purposeRas-like without CAAX 2 (RIT2), a member of the Ras superfamily of small guanosine triphosphatases, is involved in regulating neuronal function. RIT2 is a unique member of the Ras family in that RIT2 is preferentially expressed in various neurons, including retinal neurons. The mechanisms that regulate RIT2 expression in neurons were studied.

methodsReverse transcription-quantitative PCR (RT-qPCR), immunohistochemistry, western blotting, bioinformatic prediction, electrophoretic mobility shift assay (EMSA), and cell transfection methods were used.

resultsWith immunohistochemistry of the mouse retina, RIT2 protein was detected in the ganglion cell layer (GCL), inner plexiform layer, inner nuclear layer, and outer plexiform layer, with the strongest staining in the GCL and the inner plexiform layer. RT-qPCR combined with laser capture microdissection detected Rit2 messenger RNA in the GCL and the inner nuclear layer. Western blot analysis showed a large increase in the RIT2 protein in the retina during maturation from newborn to adult. Transient transfection identified the 1.3 kb upstream region of human RIT2 as capable of driving expression in neuronal cell lines. Based on the known expression pattern and biological activity, we hypothesized that POU4 family factors might modulate RIT2 expression in retinal ganglion cells (RGCs). Bioinformatic analyses predicted six POU4 factor-binding sites within the 1.3 kb human RIT2 promoter region. EMSA analyses showed binding of POU4 proteins to three of the six predicted sites. Cotransfection with expression vectors demonstrated that POU4 proteins can indeed modulate the human RIT2 promoter, and that ISL1, a LIM homeodomain factor, can further modulate the activity of the POU4 factors.

conclusionsThese studies confirm the expression of RIT2 in retinal neuronal cells, including RGCs, begin to reveal the mechanisms responsible for neuronal expression of RIT2, and suggest a role for the POU4 family factors in modulating RIT2 expression in RGCs.

Indexed as

AnimalsBase SequenceBinding SitesCell Line, TumorComputational BiologyGene Expression RegulationGlycoproteinsHumansImmunohistochemistryMiceMice, Inbred C57BLMolecular Sequence DataMonomeric GTP-Binding ProteinsNerve Tissue ProteinsOrgan SpecificityPOU Domain FactorsGlycoproteinsMonomeric GTP-Binding ProteinsNerve Tissue ProteinsPOU Domain FactorsRiT2 protein, humanRit2 protein, mouseRNA, Messenger

Identifiers

PMID23805044
PMCPMC3692409
OpenAlexW245318569

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.