Evidence map›Paper›PMID 23804760›Full record

ArticleNucleic acids research2013

Structural basis for S-adenosylmethionine binding and methyltransferase activity by mitochondrial transcription factor B1.

Kip E Guja, Krithika Venkataraman, Elena Yakubovskaya, Hui Shi, Edison Mejia, Elena Hambardjieva, A Wali Karzai, Miguel Garcia-Diaz

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Mechanistic insights into 50Science advances · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Mechanisms of mammalian mitochondrial transcription.Protein science : a publication of the Protein Society · 2019
    Review
  7. Article
  8. Structural basis of mitochondrial transcription.Nature structural & molecular biology · 2018
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kip E GujaDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794, USA, Medical Scientist Training Program, Stony Brook University Medical Center, Stony Brook, NY 11794, USA and Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794, USA.
Krithika Venkataraman
Elena Yakubovskaya
Hui Shi
Edison Mejia
Elena Hambardjieva
A Wali Karzai
Miguel Garcia-Diaz
Stony Brook University · USStony Brook University Hospital · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008444 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FROHMAN, MICHAEL A. · 1992 to 2024
$12.6M
Quality Control of Protein TranslationR01GM065319 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI KARZAI, A. WALI · 2002 to 2012
$2.5M
Mechanisms of mitochondrial transcriptionR01GM100021 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GARCIA-DIAZ, MIGUEL · 2012 to 2016
$1.5M
Analysis of RNA polymerase fidelity and its implications for cellular functionR00ES015421 · NIEHS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GARCIA-DIAZ, MIGUEL · 2008 to 2010
$733k
Characterization of an essential mitochondrial rRNA methyltransferaseF30ES022930 · NIEHS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GUJA, KIP E · 2013 to 2014
$95k
NIEHS NIH HHS F30 ES022930NIEHS NIH HHS F30-ES022930NIEHS NIH HHS R00 ES015421NIEHS NIH HHS R00-ES015421NIGMS NIH HHS R01 GM065319NIGMS NIH HHS R01-GM065319NIGMS NIH HHS R01 GM100021NIGMS NIH HHS R01-GM100021NIGMS NIH HHS T32 GM008444
6 · The paper itself

Abstract

Eukaryotic transcription factor B (TFB) proteins are homologous to KsgA/Dim1 ribosomal RNA (rRNA) methyltransferases. The mammalian TFB1, mitochondrial (TFB1M) factor is an essential protein necessary for mitochondrial gene expression. TFB1M mediates an rRNA modification in the small ribosomal subunit and thus plays a role analogous to KsgA/Dim1 proteins. This modification has been linked to mitochondrial dysfunctions leading to maternally inherited deafness, aminoglycoside sensitivity and diabetes. Here, we present the first structural characterization of the mammalian TFB1 factor. We have solved two X-ray crystallographic structures of TFB1M with (2.1 Å) and without (2.0 Å) its cofactor S-adenosyl-L-methionine. These structures reveal that TFB1M shares a conserved methyltransferase core with other KsgA/Dim1 methyltransferases and shed light on the structural basis of S-adenosyl-L-methionine binding and methyltransferase activity. Together with mutagenesis studies, these data suggest a model for substrate binding and provide insight into the mechanism of methyl transfer, clarifying the role of this factor in an essential process for mitochondrial function.

Indexed as

AnimalsDNA-Binding ProteinsHumansLigandsMethyltransferasesMiceMitochondrial ProteinsModels, MolecularProtein ConformationS-AdenosylmethionineTranscription Factors16S rRNA (adenine(1518)-N(6)-adenine(1519)-N(6))-dimethyltransferaseDNA-Binding ProteinsLigandsMethyltransferasesMitochondrial ProteinsS-AdenosylmethionineTFB1M protein, humanTfb1m protein, mouseTranscription Factors

Identifiers

PMID23804760
PMCPMC3763538
OpenAlexW2043249950

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.