Evidence map›Paper›PMID 23804638›Full record

ArticleJournal of virology2013

Coagulation factor binding orientation and dimerization may influence infectivity of adenovirus-coagulation factor complexes.

Eric E Irons, Justin W Flatt, Konstantin Doronin, Tara L Fox, Mauro Acchione, Phoebe L Stewart, Dmitry M Shayakhmetov

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Cryogenic electron microscopy and coagulation factors.Current opinion in hematology · 2026
    Review
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  6. The Prothrombin-Prothrombinase Interaction.Sub-cellular biochemistry · 2024
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  13. Review
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  15. Gene Therapy Leaves a Vicious Cycle.Frontiers in oncology · 2019
    Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Eric E IronsDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, USA.
Justin W Flatt
Konstantin Doronin
Tara L Fox
Mauro Acchione
Phoebe L Stewart
Dmitry M Shayakhmetov
Case Western Reserve University · USUniversity of Washington · USSaint Louis University · USUniversity of Washington Medical Center · US

Funding

MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
Innate immunity to adenovirus vectorsR01AI065429 · NIAID · UNIVERSITY OF WASHINGTON · PI SHAYAKHMETOV, DMITRY · 2005 to 2019
$5.6M
Adenovirus-host interactions and in vivo virus targetingR01CA141439 · NCI · UNIVERSITY OF WASHINGTON · PI SHAYAKHMETOV, DMITRY · 2009 to 2013
$2.4M
NCI NIH HHS CA141439NCI NIH HHS R01 CA141439NIAID NIH HHS AI065429NIAID NIH HHS R01 AI065429NIGMS NIH HHS T32 GM008320
6 · The paper itself

Abstract

Adenoviruses (Ads) are promising vectors for therapeutic interventions in humans. When injected into the bloodstream, Ad vectors can bind several vitamin K-dependent blood coagulation factors, which contributes to virus sequestration in the liver by facilitating transduction of hepatocytes. Although both coagulation factors FVII and FX bind the hexon protein of human Ad serotype 5 (HAdv5) with a very high affinity, only FX appears to play a role in mediating Ad-hepatocyte transduction in vivo. To understand the discrepancy between efficacy of FVII binding to hexon and its apparently poor capacity for supporting virus cell entry, we analyzed the HAdv5-FVII complex by using high-resolution cryo-electron microscopy (cryo-EM) followed by molecular dynamic flexible fitting (MDFF) simulations. The results indicate that although hexon amino acids T423, E424, and T425, identified earlier as critical for FX binding, are also involved in mediating binding of FVII, the FVII GLA domain sits within the surface-exposed hexon trimer depression in a different orientation from that found for FX. Furthermore, we found that when bound to hexon, two proximal FVII molecules interact via their serine protease (SP) domains and bury potential heparan sulfate proteoglycan (HSPG) receptor binding residues within the dimer interface. In contrast, earlier cryo-EM studies of the Ad-FX interaction showed no evidence of dimer formation. Dimerization of FVII bound to Ad may be a contributing mechanistic factor for the differential infectivity of Ad-FX and Ad-FVII complexes, despite high-affinity binding of both these coagulation factors to the virus.

Indexed as

Genetic VectorsAdenoviruses, HumanAnimalsCHO CellsCricetinaeCricetulusFactor VIIFactor XHEK293 CellsHepatocytesHumansModels, MolecularMolecular Dynamics SimulationProtein Structure, QuaternaryProtein Structure, TertiaryVirus InternalizationFactor VIIFactor X

Identifiers

PMID23804638
PMCPMC3754089
OpenAlexW2117825810

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.