Evidence map›Paper›PMID 23803301›Full record

ArticleBriefings in bioinformatics2013

Best practices in bioinformatics training for life scientists.

Allegra Via, Thomas Blicher, Erik Bongcam-Rudloff, Michelle D Brazas, Cath Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Pedro L Fernandes, Celia van Gelder and 9 more

Abstract read
In one paragraph

Article in Briefings in bioinformatics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Ten simple rules for developing a training program.PLoS computational biology · 2025
    Article
  4. Review
  5. Article
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  9. Article
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  16. Article
  17. Integrating Molecular Biology and Bioinformatics Education.Journal of integrative bioinformatics · 2019
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Allegra ViaDepartment of Physics, Sapienza University, P.le Aldo Moro 5, 00185 Rome, Italy. allegra.via@uniroma1.it.
Thomas Blicher
Erik Bongcam-Rudloff
Michelle D Brazas
Cath Brooksbank
Aidan Budd
Javier De Las Rivas
Jacqueline Dreyer
Pedro L Fernandes
Celia van Gelder
Joachim Jacob
Rafael C Jimenez
Jane Loveland
Federico Moran
Nicola Mulder
Tommi Nyrönen
Kristian Rother
Maria Victoria Schneider
Teresa K Attwood

Funding

Biotechnology and Biological Sciences Research Council
6 · The paper itself

Abstract

The mountains of data thrusting from the new landscape of modern high-throughput biology are irrevocably changing biomedical research and creating a near-insatiable demand for training in data management and manipulation and data mining and analysis. Among life scientists, from clinicians to environmental researchers, a common theme is the need not just to use, and gain familiarity with, bioinformatics tools and resources but also to understand their underlying fundamental theoretical and practical concepts. Providing bioinformatics training to empower life scientists to handle and analyse their data efficiently, and progress their research, is a challenge across the globe. Delivering good training goes beyond traditional lectures and resource-centric demos, using interactivity, problem-solving exercises and cooperative learning to substantially enhance training quality and learning outcomes. In this context, this article discusses various pragmatic criteria for identifying training needs and learning objectives, for selecting suitable trainees and trainers, for developing and maintaining training skills and evaluating training quality. Adherence to these criteria may help not only to guide course organizers and trainers on the path towards bioinformatics training excellence but, importantly, also to improve the training experience for life scientists.

Indexed as

Biological Science DisciplinesComputational BiologyCurriculumDatabase Management SystemsData MiningProgramming LanguagesSoftware DesignTeachingbioinformaticsbioinformatics coursestrainingtraining life scientiststrain the trainers

Identifiers

PMID23803301
PMCPMC3771230

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.