Evidence map›Paper›PMID 23801864›Full record

ArticleWorld journal of gastroenterology2013

XPC Lys939Gln polymorphism, smoking and risk of sporadic colorectal cancer among Malaysians.

Abdul Aziz Ahmad Aizat, Mohd Shahpudin Siti Nurfatimah, Mustapha Mohd Aminudin, Ravindran Ankathil

Open access · hybridAbstract read
In one paragraph

Article in World journal of gastroenterology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. XPC intron11 C/A polymorphism as a risk factor for prostate cancer.Environmental health and preventive medicine · 2016
    Article
  7. Lack of Associations betweenBioMed research international · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Abdul Aziz Ahmad AizatHuman Genome Centre, School of Medical Sciences,Universiti Sains Malaysia, Health Campus,16150 Kubang Kerian, Kelantan, Malaysia.
Mohd Shahpudin Siti Nurfatimah
Mustapha Mohd Aminudin
Ravindran Ankathil
Universiti Sains Malaysia · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo investigate the risk association of xeroderma pigmentosum group C (XPC) Lys939Gln polymorphism alone and in combination with cigarette smoking on colorectal cancer (CRC) predisposition.

methodsPeripheral blood samples of 510 study subjects (255 CRC patients, 255 controls)were collected. DNA was extracted and genotyping was performed using polymerase chain reaction-restriction fragment length polymorphism. The association between polymorphic genotype and CRC predisposition was determined using the OR and 95%CI.

resultsThe frequency of the homozygous variant (Gln/Gln) genotype was significantly higher in cases compared with controls (16.0% vs 10.2%, P = 0.049). The Gln/Gln genotype of XPC showed a significantly higher association with the risk of CRC (OR = 1.884; 95%CI: 1.082-3.277; P = 0.025). In the case of allele frequencies, variant allele C was associated with a significantly increased risk of CRC (OR = 1.375; 95%CI: 1.050-1.802; P = 0.020). Moreover, the risk was markedly higher for those who were carriers of the Gln/Gln variant genotype and were also cigarette smokers (OR = 3.409; 95%CI: 1.061-10.949; P = 0.032).

conclusionThe XPC Gln/Gln genotype alone and in combination with smoking increases the risk of CRC among Malaysians.

Indexed as

Polymorphism, Single NucleotideAdultAgedAged, 80 and overAsian PeopleCase-Control StudiesChi-Square DistributionColorectal NeoplasmsDNA-Binding ProteinsFemaleGene FrequencyGenetic Predisposition to DiseaseHeterozygoteHomozygoteHumansLogistic ModelsDNA-Binding ProteinsXPC protein, humanCigarette smokingColorectal cancerDNA repairSusceptibility riskXeroderma pigmentosum group C Lys939Gln polymorphism

Identifiers

PMID23801864
PMCPMC3691041
OpenAlexW2116777853

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.