Evidence map›Paper›PMID 23800453›Full record

ArticleGenome research2013

The Y chromosome as a regulatory element shaping immune cell transcriptomes and susceptibility to autoimmune disease.

Laure K Case, Emma H Wall, Julie A Dragon, Naresha Saligrama, Dimitry N Krementsov, Mohamad Moussawi, James F Zachary, Sally A Huber, Elizabeth P Blankenhorn, Cory Teuscher

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 142 citations in OpenAlex.

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  10. Sex as a modifier of genetic risk for type 1 diabetes.Diabetes, obesity & metabolism · 2025
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38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Laure K CaseDepartment of Medicine, University of Vermont, Burlington, Vermont 05405, USA.
Emma H Wall
Julie A Dragon
Naresha Saligrama
Dimitry N Krementsov
Mohamad Moussawi
James F Zachary
Sally A Huber
Elizabeth P Blankenhorn
Cory Teuscher
University of Vermont · USDrexel University · USLaboratory of Molecular Genetics · PLUniversity of Illinois Urbana-Champaign · US

Funding

Vermont INBRE Administrative Supplement 2024 AWD 118P20GM103449 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI CHRISTOPHER S FRANCKLYN · 2012 to 2026
$58.4M
VOLATILE SIGNALING IN PHARBITIS NILP20RR016462 · NCRR · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI VAN HOUTEN, JUDITH L · 2001 to 2011
$31.1M
Synovial V delta 1 cells kill Th2 cellsP01AI045666 · NIAID · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI BUDD, RALPH C · 1999 to 2010
$12.5M
Vermont Immunobioloigy/ Infectious Diseases CenterP20GM103496 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2012 to 2015
$8.7M
Histamine Receptor Signaling in CNS Autoimmune DiseaseR01NS061014 · NINDS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI TEUSCHER, CORY · 2008 to 2012
$3.1M
Tregulatory cells in myocarditisR01HL108371 · NHLBI · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI HUBER, SALLY A · 2011 to 2014
$1.5M
Sex Chromosomes in Fetal Programming and Susceptibility to EAER01NS060901 · NINDS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI TEUSCHER, CORY · 2008 to 2010
$1.4M
NCRR NIH HHS P20 RR016462NCRR NIH HHS P20RR16462NHLBI NIH HHS HL108371NHLBI NIH HHS R01 HL108371NIAID NIH HHS AI45666NIAID NIH HHS P01 AI045666NIGMS NIH HHS 8P20GM103449NIGMS NIH HHS P20 GM103449NIGMS NIH HHS P20 GM103496NINDS NIH HHS NS061014NINDS NIH HHS R01 NS060901NINDS NIH HHS R01 NS061014
6 · The paper itself

Abstract

Understanding the DNA elements that constitute and control the regulatory genome is critical for the appropriate therapeutic management of complex diseases. Here, using chromosome Y (ChrY) consomic mouse strains on the C57BL/6J (B6) background, we show that susceptibility to two diverse animal models of autoimmune disease, experimental allergic encephalomyelitis (EAE) and experimental myocarditis, correlates with the natural variation in copy number of Sly and Rbmy multicopy ChrY genes. On the B6 background, ChrY possesses gene regulatory properties that impact genome-wide gene expression in pathogenic CD4(+) T cells. Using a ChrY consomic strain on the SJL background, we discovered a preference for ChrY-mediated gene regulation in macrophages, the immune cell subset underlying the EAE sexual dimorphism in SJL mice, rather than CD4(+) T cells. Importantly, in both genetic backgrounds, an inverse correlation exists between the number of Sly and Rbmy ChrY gene copies and the number of significantly up-regulated genes in immune cells, thereby supporting a link between copy number variation of Sly and Rbmy with the ChrY genetic element exerting regulatory properties. Additionally, we show that ChrY polymorphism can determine the sexual dimorphism in EAE and myocarditis. In humans, an analysis of the CD4(+) T cell transcriptome from male multiple sclerosis patients versus healthy controls provides further evidence for an evolutionarily conserved mechanism of gene regulation by ChrY. Thus, as in Drosophila, these data establish the mammalian ChrY as a member of the regulatory genome due to its ability to epigenetically regulate genome-wide gene expression in immune cells.

Indexed as

Genetic Predisposition to DiseaseTranscriptomeAdaptor Proteins, Signal TransducingAdaptor Proteins, Vesicular TransportAnimalsCD4-Positive T-LymphocytesDNA Copy Number VariationsEncephalomyelitis, Autoimmune, ExperimentalFemaleGene DosageHumansMacrophagesMaleMiceMice, Inbred C57BLMultiple SclerosisAdaptor Proteins, Signal TransducingAdaptor Proteins, Vesicular TransportNuclear ProteinsRbmy protein, mouseRNA-Binding ProteinsSLY1 protein, mouse

Identifiers

PMID23800453
PMCPMC3759723
OpenAlexW2084194797

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.