Evidence map›Paper›PMID 23800205›Full record

ArticleBMC microbiology2013

Diversity and biofilm-production ability among isolates of Escherichia coli phylogroup D belonging to ST69, ST393 and ST405 clonal groups.

Ângela Novais, Claudia Vuotto, João Pires, Carolina Montenegro, Gianfranco Donelli, Teresa M Coque, Luísa Peixe

Abstract read
In one paragraph

Article in BMC microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. ZoonoticmBio · 2025
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  2. Fosfomycin-resistantJAC-antimicrobial resistance · 2025
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  5. The First Report ofMicroorganisms · 2024
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  6. Whole-Genome Sequencing of anInfection and drug resistance · 2024
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  7. Biofilm Formation byMicroorganisms · 2023
    Article
  8. Article
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  11. Article
  12. Repeated Isolation of Extended-Spectrum-β-Lactamase-PositiveAntimicrobial agents and chemotherapy · 2019
    Article
  13. Article
  14. Incorporation ofFrontiers in veterinary science · 2018
    Article
  15. Article
  16. Trends in ExPEC serogroups in the UK and their significance.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2016
    Article
  17. Article
  18. Article
  19. MALDI-TOF mass spectrometry as a tool for the discrimination of high-risk Escherichia coli clones from phylogenetic groups B2 (ST131) and D (ST69, ST405, ST393).European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2014
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ângela NovaisDepartamento de Microbiologia, REQUIMTE, Faculdade Farmácia Universidade Porto, Rua Jorge Viterbo Ferreira n° 228, 4050-313 Porto, Porto, Portugal. angelasilvanovais@gmail.com
Claudia Vuotto
João Pires
Carolina Montenegro
Gianfranco Donelli
Teresa M Coque
Luísa Peixe

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPhylogenetic group D Escherichia coli clones (ST69, ST393, ST405) are increasingly reported as multidrug resistant strains causing extra-intestinal infections. We aim to characterize inter- and intraclonal diversity of a broad sample (isolates from different geographic locations and origins with variable antibiotic resistance profiles, 1980-2010) and their ability to adhere and form biofilm by both a modified quantitative biofilm producing assay and Field Emission Scanning Electron Microscopy (FESEM).

resultsHigh virulence scores were observed among ST69 (median 14/range 9-15) and ST393 (median 14/range 8-15) clones, particularly enriched in pap alleles, iha, kpsMTII-K5 and ompT, in contrast with ST405 (median 6/range 2-14) isolates, exhibiting frequently fyuA, malX and traT. All ST69 and ST393 and only two ST405 isolates were classified as ExPEC. Biofilm production was detected in two non-clinical ST69 and three ST393 isolates from different origins showing variable virulence profiles. Within each clonal group, and despite the high diversity of PFGE-types observed, isolates from different countries and recovered over large periods of time were clustered in a few groups sharing common virulence gene profiles among ST69 (n = 10 isolates) and ST393 (n = 9 isolates) (fimH-iha-iutA-kpsMTII-K5-(traT)-sat-(ompT)-papA-papEF-papGII-papC) or ST405 (n = 6 isolates) (fimH-traT-fyuA-malX).

conclusionsThis study highlights the circulation of highly transmissible ST69, ST393 and ST405 variants among different settings. Biofilm production seems not to be directly correlated with their epidemiological success.

Indexed as

Genetic VariationBiofilmsCluster AnalysisElectrophoresis, Gel, Pulsed-FieldEscherichia coliEscherichia coli ProteinsGenotypeHumansMicroscopy, Electron, ScanningMolecular TypingVirulence FactorsEscherichia coli ProteinsVirulence Factors

Identifiers

PMID23800205
PMCPMC3695789

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.