ArticleGenome biology2013
A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat.
Article in Genome biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
26 citing papers in PubMed.
- QTL rich genomic clusters in wheat: a catalogue for resistance toFrontiers in plant science · 2026Review
- Breeding for Economically and Environmentally Sustainable Wheat Varieties: An Integrated Approach from Genomics to Selection.Biology · 2022Review
- The effects of crop attributes, selection, and recombination on Canadian bread wheat molecular variation.The plant genome · 2021Article
- Soybean BARCSoySNP6K: An assay for soybean genetics and breeding research.The Plant journal : for cell and molecular biology · 2020Article
- The chromosome-scale genome reveals the evolution and diversification after the recent tetraploidization event in tea plant.Horticulture research · 2020Article
- Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species.BMC biology · 2019Article
- Physical location of tandem repeats in the wheat genome and application for chromosome identification.Planta · 2019Article
- SNP-based pool genotyping and haplotype analysis accelerate fine-mapping of the wheat genomic region containing stripe rust resistance gene Yr26.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Features of the organization of bread wheat chromosome 5BS based on physical mapping.BMC genomics · 2018Article
- Sequencing flow-sorted short arm of Haynaldia villosa chromosome 4V provides insights into its molecular structure and virtual gene order.BMC genomics · 2017Article
- Single-molecule sequencing and Hi-C-based proximity-guided assembly of amaranth (Amaranthus hypochondriacus) chromosomes provide insights into genome evolution.BMC biology · 2017Article
- Coordination of Bactericidal and Iron Regulatory Functions of Hepcidin in Innate Antimicrobial Immunity in a Zebrafish Model.Scientific reports · 2017Article
- Solar Radiation-Associated Adaptive SNP Genetic Differentiation in Wild Emmer Wheat,Frontiers in plant science · 2017Article
- Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.Plant biotechnology journal · 2016Article
- BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.Plant biotechnology journal · 2016Article
- A High Resolution Radiation Hybrid Map of Wheat Chromosome 4A.Frontiers in plant science · 2016Article
- A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B.BMC genomics · 2015Article
- The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements.BMC genomics · 2015Article
- High-throughput physical map anchoring via BAC-pool sequencing.BMC plant biology · 2015Article
- New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing.Plant science : an international journal of experimental plant biology · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
20 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundAs for other major crops, achieving a complete wheat genome sequence is essential for the application of genomics to breeding new and improved varieties. To overcome the complexities of the large, highly repetitive and hexaploid wheat genome, the International Wheat Genome Sequencing Consortium established a chromosome-based strategy that was validated by the construction of the physical map of chromosome 3B. Here, we present improved strategies for the construction of highly integrated and ordered wheat physical maps, using chromosome 1BL as a template, and illustrate their potential for evolutionary studies and map-based cloning.
resultsUsing a combination of novel high throughput marker assays and an assembly program, we developed a high quality physical map representing 93% of wheat chromosome 1BL, anchored and ordered with 5,489 markers including 1,161 genes. Analysis of the gene space organization and evolution revealed that gene distribution and conservation along the chromosome results from the superimposition of the ancestral grass and recent wheat evolutionary patterns, leading to a peak of synteny in the central part of the chromosome arm and an increased density of non-collinear genes towards the telomere. With a density of about 11 markers per Mb, the 1BL physical map provides 916 markers, including 193 genes, for fine mapping the 40 QTLs mapped on this chromosome.
conclusionsHere, we demonstrate that high marker density physical maps can be developed in complex genomes such as wheat to accelerate map-based cloning, gain new insights into genome evolution, and provide a foundation for reference sequencing.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.