Evidence map›Paper›PMID 23799084›Full record

ArticlePloS one2013

Interferon regulatory factor 1 polymorphisms previously associated with reduced HIV susceptibility have no effect on HIV disease progression.

Aida Sivro, Lyle R McKinnon, Hezhao Ji, Joshua Kimani, Walter Jaoko, Francis A Plummer, Ruey-Chyi Su, T Blake Ball

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Natural Resistance to HIV Infection: Role of Immune Activation.Immunity, inflammation and disease · 2025
    Review
  2. Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Aida SivroDepartment of Medical Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.
Lyle R McKinnon
Hezhao Ji
Joshua Kimani
Walter Jaoko
Francis A Plummer
Ruey-Chyi Su
T Blake Ball
University of Manitoba · CAPublic Health Agency of Canada · CAUniversity of Nairobi · KEUniversity of Toronto · CA

Funding

Canadian Institutes of Health Research 103231
6 · The paper itself

Abstract

introductionInterferon regulatory factor 1 (IRF1) is induced by HIV early in the infection process and serves two functions: transactivation of the HIV-1 genome and thus replication, and eliciting antiviral innate immune responses. We previously described three IRF1 polymorphisms that correlate with reduced IRF1 expression and reduced HIV susceptibility.

objectiveTo determine whether IRF1 polymorphisms previously associated with reduced HIV susceptibility play a role in HIV pathogenesis and disease progression in HIV-infected ART-naïve individuals.

methodsIRF1 genotyping for polymorphisms (619, MS and 6516) was performed by PCR in 847 HIV positive participants from a sex worker cohort in Nairobi, Kenya. Rates of CD4+ T cell decline and viral loads (VL) were analyzed using linear mixed models.

resultsThree polymorphisms in the IRF1, located at 619, microsatellite region and 6516 of the gene, previously associated with decreased susceptibility to HIV infection show no effect on disease progression, either measured by HIV-1 RNA levels or the slopes of CD4 decline before treatment initiation.

conclusionWhereas these three polymorphisms in the IRF1 gene protect against HIV-1 acquisition, they appear to exert no discernable effects once infection is established.

Indexed as

Polymorphism, Single NucleotideAdultCD4 Lymphocyte CountDisease ProgressionFemaleFollow-Up StudiesGenetic Association StudiesGenetic Predisposition to DiseaseHIV-1HIV InfectionsHumansInterferon Regulatory Factor-1Microsatellite RepeatsMiddle AgedSequence Analysis, DNASex WorkersInterferon Regulatory Factor-1IRF1 protein, human

Identifiers

PMID23799084
PMCPMC3683001
OpenAlexW2071692035

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.