Evidence map›Paper›PMID 23798993›Full record

ArticlePloS one2013

Gene expression profiling specifies chemokine, mitochondrial and lipid metabolism signatures in leprosy.

Luana Tatiana Albuquerque Guerreiro, Anna Beatriz Robottom-Ferreira, Marcelo Ribeiro-Alves, Thiago Gomes Toledo-Pinto, Tiana Rosa Brito, Patrícia Sammarco Rosa, Felipe Galvan Sandoval, Márcia Rodrigues Jardim, Sérgio Gomes Antunes, Edward J Shannon and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Pooled it
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  10. What happens when Schwann cells are exposed toIBRO neuroscience reports · 2023
    Review
  11. Article
  12. Cutting edge medical research.Medical journal, Armed Forces India · 2022
    Article
  13. Mitochondria inInternational journal of molecular sciences · 2022
    Review
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  15. Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Luana Tatiana Albuquerque GuerreiroLaboratório de Hanseníase, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, FIOCRUZ-RJ, Rio de Janeiro, Brazil.
Anna Beatriz Robottom-Ferreira
Marcelo Ribeiro-Alves
Thiago Gomes Toledo-Pinto
Tiana Rosa Brito
Patrícia Sammarco Rosa
Felipe Galvan Sandoval
Márcia Rodrigues Jardim
Sérgio Gomes Antunes
Edward J Shannon
Euzenir Nunes Sarno
Maria Cristina Vidal Pessolani
Diana Lynn Williams
Milton Ozório Moraes
Fundação Oswaldo Cruz · BRNational Hansen's Disease Program · USInstituto Lauro de Souza Lima · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herein, we performed microarray experiments in Schwann cells infected with live M. leprae and identified novel differentially expressed genes (DEG) in M. leprae infected cells. Also, we selected candidate genes associated or implicated with leprosy in genetic studies and biological experiments. Forty-seven genes were selected for validation in two independent types of samples by multiplex qPCR. First, an in vitro model using THP-1 cells was infected with live Mycobacterium leprae and M. bovis bacillus Calmette-Guérin (BCG). In a second situation, mRNA obtained from nerve biopsies from patients with leprosy or other peripheral neuropathies was tested. We detected DEGs that discriminate M. bovis BCG from M. leprae infection. Specific signatures of susceptible responses after M. leprae infection when compared to BCG lead to repression of genes, including CCL2, CCL3, IL8 and SOD2. The same 47-gene set was screened in nerve biopsies, which corroborated the down-regulation of CCL2 and CCL3 in leprosy, but also evidenced the down-regulation of genes involved in mitochondrial metabolism, and the up-regulation of genes involved in lipid metabolism and ubiquitination. Finally, a gene expression signature from DEG was identified in patients confirmed of having leprosy. A classification tree was able to ascertain 80% of the cases as leprosy or non-leprous peripheral neuropathy based on the expression of only LDLR and CCL4. A general immune and mitochondrial hypo-responsive state occurs in response to M. leprae infection. Also, the most important genes and pathways have been highlighted providing new tools for early diagnosis and treatment of leprosy.

Indexed as

Lipid MetabolismTranscriptomeCells, CulturedChemokinesCluster AnalysisFemaleGene Expression ProfilingGene Expression RegulationHost-Pathogen InteractionsHumansLeprosyMaleMitochondriaMycobacterium bovisMycobacterium lepraeOligonucleotide Array Sequence AnalysisChemokines

Identifiers

PMID23798993
PMCPMC3683049
OpenAlexW2103243423

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.