Evidence map›Paper›PMID 23798674›Full record

ArticleThe Journal of biological chemistry2013

Population shift underlies Ca2+-induced regulatory transitions in the sodium-calcium exchanger (NCX).

Moshe Giladi, Reuben Hiller, Joel A Hirsch, Daniel Khananshvili

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. The NaThe Journal of veterinary medical science · 2026
    Review
  3. Article
  4. Article
  5. Structural dynamics of NaCommunications biology · 2024
    Article
  6. Article
  7. Review
  8. Review
  9. Modulation of the cardiac NaCell calcium · 2020
    Review
  10. Article
  11. Article
  12. Modeling NaJournal of molecular and cellular cardiology · 2016
    Article
  13. Article
  14. Review
  15. Sodium recognition by the Na+/Ca2+ exchanger in the outward-facing conformation.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Moshe GiladiDepartment of Physiology and Pharmacology, Sackler School of Medicine, Tel-Aviv University, Ramat-Aviv 69978, Israel.
Reuben Hiller
Joel A Hirsch
Daniel Khananshvili

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In eukaryotic Na(+)/Ca(2+) exchangers (NCX) the Ca(2+) binding CBD1 and CBD2 domains form a two-domain regulatory tandem (CBD12). An allosteric Ca(2+) sensor (Ca3-Ca4 sites) is located on CBD1, whereas CBD2 contains a splice-variant segment. Recently, a Ca(2+)-driven interdomain switch has been described, albeit how it couples Ca(2+) binding with signal propagation remains unclear. To resolve the dynamic features of Ca(2+)-induced conformational transitions we analyze here distinct splice variants and mutants of isolated CBD12 at varying temperatures by using small angle x-ray scattering (SAXS) and equilibrium (45)Ca(2+) binding assays. The ensemble optimization method SAXS analysis demonstrates that the apo and Mg(2+)-bound forms of CBD12 are highly flexible, whereas Ca(2+) binding to the Ca3-Ca4 sites results in a population shift of conformational landscape to more rigidified states. Population shift occurs even under conditions in which no effect of Ca(2+) is observed on the globally derived Dmax (maximal interatomic distance), although under comparable conditions a normal [Ca(2+)]-dependent allosteric regulation occurs. Low affinity sites (Ca1-Ca2) of CBD1 do not contribute to Ca(2+)-induced population shift, but the occupancy of these sites by 1 mM Mg(2+) shifts the Ca(2+) affinity (Kd) at the neighboring Ca3-Ca4 sites from ∼ 50 nM to ∼ 200 nM and thus, keeps the primary Ca(2+) sensor (Ca3-Ca4 sites) within a physiological range. Thus, Ca(2+) binding to the Ca3-Ca4 sites results in a population shift, where more constraint conformational states become highly populated at dynamic equilibrium in the absence of global conformational transitions in CBD alignment.

Indexed as

Molecular Dynamics SimulationAnimalsBinding SitesCalciumDogsProtein BindingProtein Structure, TertiarySodium-Calcium ExchangerCalciumSodium-Calcium Exchangersodium-calcium exchanger 1Allosteric RegulationCalciumCalcium-binding ProteinsPopulation ShiftProtein ConformationSodium-Calcium Exchange

Identifiers

PMID23798674
PMCPMC3743486

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.