Evidence map›Paper›PMID 23798402›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Molecular basis for chromatin binding and regulation of MLL5.

Muzaffar Ali, Héctor Rincón-Arano, Wei Zhao, Scott B Rothbart, Qiong Tong, Susan M Parkhurst, Brian D Strahl, Lih-Wen Deng, Mark Groudine, Tatiana G Kutateladze

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
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  13. Case Report: A NovelFrontiers in pediatrics · 2022
    Article
  14. Article
  15. Review
  16. Article
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  18. Case Report:Frontiers in pediatrics · 2021
    Article
  19. Article
  20. Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Muzaffar AliDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Héctor Rincón-Arano
Wei Zhao
Scott B Rothbart
Qiong Tong
Susan M Parkhurst
Brian D Strahl
Lih-Wen Deng
Mark Groudine
Tatiana G Kutateladze
Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZAUniversity of Colorado Denver · USNational University of Singapore · SGUNC Lineberger Comprehensive Cancer CenterUniversity of North Carolina at Chapel Hill · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
CORE--VECTOR PRODUCTIONP30DK056465 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HEIMFELD, SHELLY · 1999 to 2014
$14.9M
MAINTENANCE OF GENE EXPRESSION IN THE RED CELL LINEAGER01HL065440 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 2000 to 2018
$12.4M
Role of Set2 and H3 methylation in chromatin functionR01GM068088 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI STRAHL, BRIAN D · 2003 to 2017
$3.4M
Molecular analysis of methylated p53R01GM101664 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2013 to 2016
$1.7M
Molecular analysis of CHD4R01GM096863 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2011 to 2014
$1.4M
Regulation of Membrane-Cortical Cytoskeleton Crosstalk by WASHR01GM097083 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PARKHURST, SUSAN M · 2011 to 2014
$1.4M
NCI NIH HHS P30 CA046934NCI NIH HHS T32 CA009156NCI NIH HHS T32CA09156NHLBI NIH HHS HL65440NHLBI NIH HHS R01 HL065440NIDDK NIH HHS P30 DK056465NIGMS NIH HHS GM068088NIGMS NIH HHS GM096863NIGMS NIH HHS GM097083NIGMS NIH HHS GM101664NIGMS NIH HHS R01 GM068088NIGMS NIH HHS R01 GM096863NIGMS NIH HHS R01 GM097083NIGMS NIH HHS R01 GM101664
6 · The paper itself

Abstract

The human mixed-lineage leukemia 5 (MLL5) protein mediates hematopoietic cell homeostasis, cell cycle, and survival; however, the molecular basis underlying MLL5 activities remains unknown. Here, we show that MLL5 is recruited to gene-rich euchromatic regions via the interaction of its plant homeodomain finger with the histone mark H3K4me3. The 1.48-Å resolution crystal structure of MLL5 plant homeodomain in complex with the H3K4me3 peptide reveals a noncanonical binding mechanism, whereby K4me3 is recognized through a single aromatic residue and an aspartate. The binding induces a unique His-Asp swapping rearrangement mediated by a C-terminal α-helix. Phosphorylation of H3T3 and H3T6 abrogates the association with H3K4me3 in vitro and in vivo, releasing MLL5 from chromatin in mitosis. This regulatory switch is conserved in the Drosophila ortholog of MLL5, UpSET, and suggests the developmental control for targeting of H3K4me3. Together, our findings provide first insights into the molecular basis for the recruitment, exclusion, and regulation of MLL5 at chromatin.

Indexed as

Amino Acid SequenceChromatinDNA-Binding ProteinsHumansModels, MolecularMolecular Sequence DataPhosphorylationProtein BindingProtein ConformationSequence Homology, Amino AcidChromatinDNA-Binding ProteinsKMT2E protein, human

Identifiers

PMID23798402
PMCPMC3710826
OpenAlexW1969263950

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.