Evidence map›Paper›PMID 23795901›Full record

ArticleAging cell2013

Life spanning murine gene expression profiles in relation to chronological and pathological aging in multiple organs.

Martijs J Jonker, Joost Pm Melis, Raoul V Kuiper, Tessa V van der Hoeven, P F K Wackers, Joke Robinson, Gijsbertus Tj van der Horst, Martijn Et Dollé, Jan Vijg, Timo M Breit and 2 more

Open access · greenAbstract read
In one paragraph

Article in Aging cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 66 citations in OpenAlex.

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  19. Betaine-homocysteineFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Martijs J Jonker *University of Amsterdam (UvA), MicroArray Department & Integrative Bioinformatics Unit (MAD-IBU), Swammerdam Institute for Life Sciences (SILS), Faculty of Science (FNWI), Amsterdam, the Netherlands.
Joost Pm Melis *National Institute for Public Health and the Environment (RIVM), Center for Health Protection, Bilthoven, the Netherlands.
Raoul V KuiperNational Institute for Public Health and the Environment (RIVM), Center for Health Protection, Bilthoven, the Netherlands.
Tessa V van der HoevenUniversity of Amsterdam (UvA), MicroArray Department & Integrative Bioinformatics Unit (MAD-IBU), Swammerdam Institute for Life Sciences (SILS), Faculty of Science (FNWI), Amsterdam, the Netherlands.
P F K WackersUniversity of Amsterdam (UvA), MicroArray Department & Integrative Bioinformatics Unit (MAD-IBU), Swammerdam Institute for Life Sciences (SILS), Faculty of Science (FNWI), Amsterdam, the Netherlands.
Joke RobinsonNational Institute for Public Health and the Environment (RIVM), Center for Health Protection, Bilthoven, the Netherlands.
Gijsbertus Tj van der HorstErasmus University Medical Center, CGC Department of Genetics, Rotterdam, The Netherlands.
Martijn Et DolléNational Institute for Public Health and the Environment (RIVM), Center for Health Protection, Bilthoven, the Netherlands.
Jan VijgAlbert Einstein College of Medicine, Department of Genetics, New York, USA.
Timo M BreitUniversity of Amsterdam (UvA), MicroArray Department & Integrative Bioinformatics Unit (MAD-IBU), Swammerdam Institute for Life Sciences (SILS), Faculty of Science (FNWI), Amsterdam, the Netherlands.
Jan Hj HoeijmakersErasmus University Medical Center, CGC Department of Genetics, Rotterdam, The Netherlands.
Harry van SteegNational Institute for Public Health and the Environment (RIVM), Center for Health Protection, Bilthoven, the Netherlands.
National Institute for Public Health and the Environment · NLUniversity of Amsterdam · NLErasmus MC · NLLeiden University Medical Center · NLAlbert Einstein College of Medicine · US

Funding

THE IMPACT OF CELLULAR DEFENSE ON THE ROLE OF Ku80 IN GENOME MAINTENANCE AND LONGP01AG017242 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI VIJG, JAN · 1999 to 2023
$46.1M
NIA NIH HHS 3P01 AG017242NIA NIH HHS P01 AG017242
6 · The paper itself

Abstract

Aging and age-related pathology is a result of a still incompletely understood intricate web of molecular and cellular processes. We present a C57BL/6J female mice in vivo aging study of five organs (liver, kidney, spleen, lung, and brain), in which we compare genome-wide gene expression profiles during chronological aging with pathological changes throughout the entire murine life span (13, 26, 52, 78, 104, and 130 weeks). Relating gene expression changes to chronological aging revealed many differentially expressed genes (DEGs), and altered gene sets (AGSs) were found in most organs, indicative of intraorgan generic aging processes. However, only ≤ 1% of these DEGs are found in all organs. For each organ, at least one of 18 tested pathological parameters showed a good age-predictive value, albeit with much inter- and intraindividual (organ) variation. Relating gene expression changes to pathology-related aging revealed correlated genes and gene sets, which made it possible to characterize the difference between biological and chronological aging. In liver, kidney, and brain, a limited number of overlapping pathology-related AGSs were found. Immune responses appeared to be common, yet the changes were specific in most organs. Furthermore, changes were observed in energy homeostasis, reactive oxygen species, cell cycle, cell motility, and DNA damage. Comparison of chronological and pathology-related AGSs revealed substantial overlap and interesting differences. For example, the presence of immune processes in liver pathology-related AGSs that were not detected in chronological aging. The many cellular processes that are only found employing aging-related pathology could provide important new insights into the progress of aging.

Indexed as

AgingAnimalsBrainFemaleGene Expression ProfilingGenome-Wide Association StudyKidneyLiverLungMiceMice, Inbred C57BLSpleenSurvival Analysisaging dynamicsdatabasegene expressionin vivopathology

Identifiers

PMID23795901
PMCPMC3772962
OpenAlexW2102042645

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.