Evidence map›Paper›PMID 23795293›Full record

ArticleeLife2013

The autoregulation of a eukaryotic DNA transposon.

Corentin Claeys Bouuaert, Karen Lipkow, Steven S Andrews, Danxu Liu, Ronald Chalmers

Open access · goldAbstract read
In one paragraph

Article in eLife, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. A novel hyperactive variant of theMolecular therapy. Nucleic acids · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Artificial optimization of bambooFrontiers in plant science · 2022
    Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Corentin Claeys BouuaertSchool of Biomedical Sciences , University of Nottingham , Nottingham , United Kingdom.
Karen Lipkow
Steven S Andrews
Danxu Liu
Ronald Chalmers
University of Nottingham · GBBabraham Institute · GBFred Hutch Cancer Center · US

Funding

Systems biology of signal control in yeastR01GM086615 · NIGMS · VTT/MSI MOLECULAR SCIENCES INSTITUTE · PI BRENT, ROGER, YU, RICHARD C. · 2009 to 2012
$2.3M
NIGMS NIH HHS R01GM086615-01Wellcome Trust 093160/Z/10/Z
6 · The paper itself

Abstract

How do DNA transposons live in harmony with their hosts? Bacteria provide the only documented mechanisms for autoregulation, but these are incompatible with eukaryotic cell biology. Here we show that autoregulation of Hsmar1 operates during assembly of the transpososome and arises from the multimeric state of the transposase, mediated by a competition for binding sites. We explore the dynamics of a genomic invasion using a computer model, supported by in vitro and in vivo experiments, and show that amplification accelerates at first but then achieves a constant rate. The rate is proportional to the genome size and inversely proportional to transposase expression and its affinity for the transposon ends. Mariner transposons may therefore resist post-transcriptional silencing. Because regulation is an emergent property of the reaction it is resistant to selfish exploitation. The behavior of distantly related eukaryotic transposons is consistent with the same mechanism, which may therefore be widely applicable. DOI:http://dx.doi.org/10.7554/eLife.00668.001.

Indexed as

DNA Transposable ElementsComputer SimulationDimerizationDNAKineticsTransposasesDNADNA Transposable ElementsTransposasesallostericallosteryDNA recombinationevolutionHost–parasite interactionsHumansystems modeling

Identifiers

PMID23795293
PMCPMC3687335
OpenAlexW2133932059

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.