Evidence map›Paper›PMID 23793442›Full record

ArticleHuman genetics2013

A novel rearrangement of occludin causes brain calcification and renal dysfunction.

Marissa A LeBlanc, Lynette S Penney, Daniel Gaston, Yuhao Shi, Erika Aberg, Mathew Nightingale, Haiyan Jiang, Roxanne M Gillett, Somayyeh Fahiminiya, Christine Macgillivray and 8 more

Abstract read
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In one paragraph

Article in Human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  4. Article
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  6. Tight Junctions in Cell Proliferation.International journal of molecular sciences · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 1 country.

Marissa A LeBlancDepartment of Pathology, Dalhousie University, 5850 College St., Sir Charles Tupper Medical Building, Room 11-F, Halifax, NS, Canada.
Lynette S Penney
Daniel Gaston
Yuhao Shi
Erika Aberg
Mathew Nightingale
Haiyan Jiang
Roxanne M Gillett
Somayyeh Fahiminiya
Christine Macgillivray
Ellen P Wood
Philip D Acott
M Naeem Khan
Mark E Samuels
Jacek Majewski
Andrew Orr
Christopher R McMaster
Karen Bedard
Dalhousie University · CAMcGill University · CACapital District Health Authority · CAIzaak Walton Killam Health Centre · CAPrincess Margaret Cancer Centre · CAUniversité de Montréal · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

Pediatric intracranial calcification may be caused by inherited or acquired factors. We describe the identification of a novel rearrangement in which a downstream pseudogene translocates into exon 9 of OCLN, resulting in band-like brain calcification and advanced chronic kidney disease in early childhood. SNP genotyping and read-depth variation from whole exome sequencing initially pointed to a mutation in the OCLN gene. The high degree of identity between OCLN and two pseudogenes required a combination of multiplex ligation-dependent probe amplification, PCR, and Sanger sequencing to identify the genomic rearrangement that was the underlying genetic cause of the disease. Mutations in exon 3, or at the 5-6 intron splice site, of OCLN have been reported to cause brain calcification and polymicrogyria with no evidence of extra-cranial phenotypes. Of the OCLN splice variants described, all make use of exon 9, while OCLN variants that use exons 3, 5, and 6 are tissue specific. The genetic rearrangement we identified in exon 9 provides a plausible explanation for the expanded clinical phenotype observed in our individuals. Furthermore, the lack of polymicrogyria associated with the rearrangement of OCLN in our patients extends the range of cranial defects that can be observed due to OCLN mutations.

Indexed as

Gene RearrangementBrainCalcinosisCanadaChild, PreschoolChromosome MappingDNA Copy Number VariationsExomeExonsFemaleGene DeletionGenotypeHomozygoteHumansIntronsKidneyOccludinOCLN protein, human

Identifiers

PMID23793442
OpenAlexW2085488008

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.