Evidence map›Paper›PMID 23793434›Full record

ArticleAnnals of Saudi medicine

The distribution of cagA and dupA genes in Helicobacter pylori strains in Kurdistan region, northern Iraq.

Azad M Salih, Amer Goreal, Nawfal R Hussein, Shahla M Abdullah, Khidir Hawrami, Mahde Assafi

Open access · diamondAbstract read
In one paragraph

Article in Annals of Saudi medicine. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Novel virulence factorWorld journal of gastroenterology · 2020
    Review
  3. Article
  4. Role ofWorld journal of gastroenterology · 2016
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Azad M SalihSchool of Medical Science, University of Duhok, Iraq. nawfal.hussein@yahoo.com
Amer Goreal
Nawfal R Hussein
Shahla M Abdullah
Khidir Hawrami
Mahde Assafi
University of Duhok · IQKoya University · IQUniversity of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

objectivesHelicobacter pylori is a Gram negative bacteria that causes peptic ulceration and gastric adenocarcinoma. H pylori virulence factors, such as cagA and dupA, are important to study in populations as they contribute to disease risk. This study aimed to look at the distribution of the cagA and dupA genes in H pylori strains isolated from patients suffering from gastroduodenal diseases in Kurdistan region, Iraq. DESIGN AND SETTINGS: A cross-sectional study conducted between June 2011 and January 2012. Biopsies were collected from the Endoscopy Department in Duhok and Sulaimania hospitals, Kurdistan region, northern Iraq. PATIENTS AND

methodsUpper gastrointestinal (GI) endoscopy examination was performed and 4 gastric biopsies (2 from the antrum and 2 from the corpus) were obtained from 204 patients. H pylori positivity was examined by CLO test; then the association between disease status and virulence factors was assessed by polymerase chain reaction.

results154 (75%) of our samples were found to be H pylori + by CLO test. Endoscopic diagnoses for those who were positive were as follows: peptic ulcer disease (PUD) including duodenal ulcer, 45; gastric ulcer, 23; and no ulcer (NPUD), 86. The overall prevalence rates of cagA and dupA were 72.7% and 18.8%, respectively. While a significant association between cagA and PUD was observed (P. ≤.017; OR=0.4; CI=0.18–0.85), no relationship between dupA and PUD could be seen.

conclusionThese data suggested that the presence of cagA may be a predictor of clinical outcome in Kurdistan region, northern Iraq.

Indexed as

AdultAntigens, BacterialBacterial ProteinsCross-Sectional StudiesDuodenal UlcerEndoscopy, GastrointestinalHelicobacter InfectionsHelicobacter pyloriHumansIraqMiddle AgedPeptic UlcerPolymerase Chain ReactionPrevalenceStomach UlcerVirulence FactorsAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriDupA protein, Helicobacter pyloriVirulence Factors

Identifiers

PMID23793434
PMCPMC6078529
OpenAlexW2409708554

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.