Evidence map›Paper›PMID 23793264›Full record

ArticleBriefings in functional genomics2013

Functional genomics of Plasmodium falciparum using metabolic modelling and analysis.

Stepan Tymoshenko, Rebecca D Oppenheim, Dominique Soldati-Favre, Vassily Hatzimanikatis

Abstract read
In one paragraph

Article in Briefings in functional genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Comparative chemical genomics inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Vitamin and cofactor acquisition in apicomplexans: SynthesisThe Journal of biological chemistry · 2020
    Review
  4. Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Stepan TymoshenkoInstitute of Chemical Engineering, Laboratory of Computational Systems Biotechnology, École Polytechnique Fédérale de Lausanne, CH-1015, Switzerland. stepan.tymoshenko@epfl.ch
Rebecca D Oppenheim
Dominique Soldati-Favre
Vassily Hatzimanikatis

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plasmodium falciparum is an obligate intracellular parasite and the leading cause of severe malaria responsible for tremendous morbidity and mortality particularly in sub-Saharan Africa. Successful completion of the P. falciparum genome sequencing project in 2002 provided a comprehensive foundation for functional genomic studies on this pathogen in the following decade. Over this period, a large spectrum of experimental approaches has been deployed to improve and expand the scope of functionally annotated genes. Meanwhile, rapidly evolving methods of systems biology have also begun to contribute to a more global understanding of various aspects of the biology and pathogenesis of malaria. Herein we provide an overview on metabolic modelling, which has the capability to integrate information from functional genomics studies in P. falciparum and guide future malaria research efforts towards the identification of novel candidate drug targets.

Indexed as

Computational BiologyGenomicsPlasmodium falciparumProtozoan ProteinsProtozoan Proteinscentral carbon metabolismconstraint-based modellingflux-balance analysisin silico gene essentialityPlasmodium falciparumsystems biology

Identifiers

PMID23793264
PMCPMC3743259

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.