Evidence map›Paper›PMID 23792274›Full record

ArticleFree radical biology & medicine2013

Inhibition of Mycobacterium tuberculosis PknG by non-catalytic rubredoxin domain specific modification: reaction of an electrophilic nitro-fatty acid with the Fe-S center.

Magdalena Gil, Martín Graña, Francisco J Schopfer, Tristan Wagner, Ana Denicola, Bruce A Freeman, Pedro M Alzari, Carlos Batthyány, Rosario Durán

Open access · greenAbstract read
In one paragraph

Article in Free radical biology & medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. MedComm · 2023
    Review
  3. Review
  4. Different modalities of host cell death and their impact onAmerican journal of physiology. Cell physiology · 2022
    Review
  5. Article
  6. Cosolvent Sites-Based Discovery ofJournal of medicinal chemistry · 2022
    Article
  7. Article
  8. Review
  9. Deletion ofAntimicrobial agents and chemotherapy · 2021
    Article
  10. Article
  11. Review
  12. Nitro-fatty acids are formed in response to virus infection and are potent inhibitors of STING palmitoylation and signaling.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 3 countries.

Magdalena GilUnidad de Bioquímica y Proteómica Analíticas, Institut Pasteur de Montevideo, Uruguay; Unidad de Bioquímica y Proteómica Analíticas, Instituto de Investigaciones Biológicas Clemente Estable, Ministerio de Educación y Cultura, Uruguay.
Martín GrañaUnidad de Bioinformática, Institut Pasteur de Montevideo, Uruguay.
Francisco J SchopferDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.
Tristan WagnerUnité de Microbiologie Structurale & CNRS URA 2185, Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris Cedex 15, France.
Ana DenicolaLaboratorio de Fisicoquímica Biológica, Facultad de Ciencias, Universidad de la República, Uruguay.
Bruce A FreemanDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.
Pedro M AlzariUnité de Microbiologie Structurale & CNRS URA 2185, Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris Cedex 15, France.
Carlos BatthyányUnidad de Bioquímica y Proteómica Analíticas, Institut Pasteur de Montevideo, Uruguay; Departamento de Bioquímica, Facultad de Medicina, Universidad de la República, Uruguay. Electronic address: batthyany@pasteur.edu.uy.
Rosario DuránUnidad de Bioquímica y Proteómica Analíticas, Institut Pasteur de Montevideo, Uruguay; Unidad de Bioquímica y Proteómica Analíticas, Instituto de Investigaciones Biológicas Clemente Estable, Ministerio de Educación y Cultura, Uruguay. Electronic address: duran@pasteur.edu.uy.
Institut Pasteur de Montevideo · UYUniversity of Pittsburgh · USCentre National de la Recherche Scientifique · FRInstituto de Investigaciones Biológicas Clemente Estable · UYInstitut Pasteur · FRMinisterio de Educación y Cultura · UYUniversidad de la República · UY

Funding

Vascular Subphenotypes of Lung DiseaseP01HL103455 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GLADWIN, MARK T · 2011 to 2020
$26.1M
Redox-Derived Pulmonary Anti-Inflammatory MediatorsR01HL064937 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FREEMAN, BRUCE ALAN · 2000 to 2015
$5.6M
Redox Transduction of Nitric Oxide SignalingR37HL058115 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FREEMAN, BRUCE ALAN · 2008 to 2017
$5.2M
NITRIC OXIDE REGULATION OF VASCULAR OXIDANT INJURYR01HL058115 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FREEMAN, BRUCE ALAN · 1998 to 2007
$3.3M
Formation of Omega 3-Derived Electrophiles During InflammationR01AT006822 · NCCIH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SCHOPFER, FRANCISCO JOSE · 2011 to 2015
$1.8M
NCCIH NIH HHS R01 AT006822NCCIH NIH HHS R01AT-006822NCIPC CDC HHS U17 CE002009NHLBI NIH HHS NIHR01-HL058115NHLBI NIH HHS P01 HL103455NHLBI NIH HHS P01-HL103455NHLBI NIH HHS R01 HL058115NHLBI NIH HHS R01 HL064937NHLBI NIH HHS R01-HL64937
6 · The paper itself

Abstract

PknG from Mycobacterium tuberculosis is a Ser/Thr protein kinase that regulates key metabolic processes within the bacterial cell as well as signaling pathways from the infected host cell. This multidomain protein has a conserved canonical kinase domain with N- and C-terminal flanking regions of unclear functional roles. The N-terminus harbors a rubredoxin-like domain (Rbx), a bacterial protein module characterized by an iron ion coordinated by four cysteine residues. Disruption of the Rbx-metal binding site by simultaneous mutations of all the key cysteine residues significantly impairs PknG activity. This encouraged us to evaluate the effect of a nitro-fatty acid (9- and 10-nitro-octadeca-9-cis-enoic acid; OA-NO2) on PknG activity. Fatty acid nitroalkenes are electrophilic species produced during inflammation and metabolism that react with nucleophilic residues of target proteins (i.e., Cys and His), modulating protein function and subcellular distribution in a reversible manner. Here, we show that OA-NO2 inhibits kinase activity by covalently adducting PknG remote from the catalytic domain. Mass spectrometry-based analysis established that cysteines located at Rbx are the specific targets of the nitroalkene. Cys-nitroalkylation is a Michael addition reaction typically reverted by thiols. However, the reversible OA-NO2-mediated nitroalkylation of the kinase results in an irreversible inhibition of PknG. Cys adduction by OA-NO2 induced iron release from the Rbx domain, revealing a new strategy for the specific inhibition of PknG. These results affirm the relevance of the Rbx domain as a target for PknG inhibition and support that electrophilic lipid reactions of Rbx-Cys may represent a new drug strategy for specific PknG inhibition.

Indexed as

AlkenesBacterial ProteinsCatalytic DomainCircular DichroismFatty AcidsMutagenesis, Site-DirectedMycobacterium tuberculosisNitro CompoundsProtein Serine-Threonine KinasesRubredoxinsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAlkenesBacterial ProteinsFatty AcidsNitro CompoundsPknH protein, Mycobacterium tuberculosisProtein Serine-Threonine KinasesRubredoxins8-anilino-1-naphthalenesulfonic acid ammonium salt9- and 10-nitro-9-cis-octadecaenoic acids9-octadecenoic acidANSbathophenanthroline disulfonateBPSelectrospray ionizationESIIAMiodoacetamideIPTGisopropyl β-D-1-thiogalactopyranosideLCliquid chromatographyMycobacterium tuberculosisNitrated fatty acidsNitroalkeneOA-NO(2) nitro-oleic acidOA oleic acidPknGRbxrubredoxinRubredoxinSer/Thr kinase

Identifiers

PMID23792274
PMCPMC4061738
OpenAlexW1969814476

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.