Evidence map›Paper›PMID 23791960›Full record

ArticleNeuropharmacology2014

Rats are the smart choice: Rationale for a renewed focus on rats in behavioral genetics.

Clarissa C Parker, Hao Chen, Shelly B Flagel, Aron M Geurts, Jerry B Richards, Terry E Robinson, Leah C Solberg Woods, Abraham A Palmer

Abstract read
In one paragraph

Article in Neuropharmacology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it, 91 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Rat models of musculoskeletal lysosomal storage disorders and their role in pre-clinical evaluation of gene therapy approaches.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Review
  5. Article
  6. Establishing the hybrid rat diversity program: a resource for dissecting complex traits.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Article
  7. Article
  8. Review
  9. Review
  10. Generation and Characterization of a NovelThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  11. Article
  12. Genomic Loci Influencing Cue-Reactivity in Heterogeneous Stock Rats.bioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Clarissa C ParkerDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Hao Chen
Shelly B Flagel
Aron M Geurts
Jerry B Richards
Terry E Robinson
Leah C Solberg Woods
Abraham A Palmer
Medical College of Wisconsin · USUniversity of Chicago · USUniversity of Michigan–Ann Arbor · USUniversity at Buffalo, State University of New York · USUniversity of Tennessee Health Science Center · US

Funding

Sequencing CoreP50DA037844 · NIDA · UNIVERSITY OF CHICAGO · PI MEYER, PAUL J · 2014 to 2023
$27.4M
Variation in Motivational Properties of Reward Cues: Implications for AddictionP01DA031656 · NIDA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FLAGEL, SHELLY BETH · 2012 to 2016
$6.3M
Systems Genetic Analysis of Methamphetamine's Motivational Effects in a Mouse AILR01DA021336 · NIDA · UNIVERSITY OF CHICAGO · PI PALMER, ABRAHAM A · 2006 to 2015
$4.0M
Advanced genetic engineering technology developmentDP2OD008396 · OD · MEDICAL COLLEGE OF WISCONSIN · PI GEURTS, ARON M · 2011 to 2011
$2.3M
Genome-wide association studies in outbred miceR01GM097737 · NIGMS · UNIVERSITY OF CHICAGO · PI PALMER, ABRAHAM A · 2011 to 2014
$1.9M
Genome-wide fine-mapping of metabolic traits in heterogeneous stock ratsR01DK088975 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI SOLBERG WOODS, LEAH CATHERINE · 2010 to 2014
$1.9M
NIDA NIH HHS P01 DA031656NIDA NIH HHS P50 DA037844NIDA NIH HHS R01 DA021336NIDDK NIH HHS R01 DK088975NIGMS NIH HHS R01 GM097737NIH HHS DP2 OD008396
6 · The paper itself

Abstract

Due in part to their rich behavioral repertoire rats have been widely used in behavioral studies of drug abuse-related traits for decades. However, the mouse became the model of choice for researchers exploring the genetic underpinnings of addiction after the first mouse study was published demonstrating the capability of engineering the mouse genome through embryonic stem cell technology. The sequencing of the mouse genome and more recent re-sequencing of numerous inbred mouse strains have further cemented the status of mice as the premier mammalian organism for genetic studies. As a result, many of the behavioral paradigms initially developed and optimized for rats have been adapted to mice. However, numerous complex and interesting drug abuse-related behaviors that can be studied in rats are very difficult or impossible to adapt for use in mice, impeding the genetic dissection of those traits. Now, technological advances have removed many of the historical limitations of genetic studies in rats. For instance, the rat genome has been sequenced and many inbred rat strains are now being re-sequenced and outbred rat stocks are being used to fine-map QTLs. In addition, it is now possible to create "knockout" rats using zinc finger nucleases (ZFN), transcription activator-like effector nucleases (TALENs) and related techniques. Thus, rats can now be used to perform quantitative genetic studies of sophisticated behaviors that have been difficult or impossible to study in mice. This article is part of a Special Issue entitled 'NIDA 40th Anniversary Issue'.

Indexed as

Genetics, BehavioralModels, AnimalAnimalsAnimals, Genetically ModifiedDNA-Binding ProteinsHumansMiceQuantitative Trait LociRatsSubstance-Related DisordersZinc FingersDNA-Binding ProteinsAddictionBehavioral geneticsGWASQTLRats

Identifiers

PMID23791960
PMCPMC3823679
OpenAlexW2073887073

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.