Evidence map›Paper›PMID 23788664›Full record

ArticleProtein engineering, design & selection : PEDS2013

Isolation of αL I domain mutants mediating firm cell adhesion using a novel flow-based sorting method.

Lauren R Pepper, Ranganath Parthasarathy, Gregory P Robbins, Nicholas N Dang, Daniel A Hammer, Eric T Boder

Open access · bronzeAbstract read
In one paragraph

Article in Protein engineering, design & selection : PEDS, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Yeast biopanning against site-specific phosphorylations in tau.Protein engineering, design & selection : PEDS · 2023
    Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Lauren R PepperDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA.
Ranganath Parthasarathy
Gregory P Robbins
Nicholas N Dang
Daniel A Hammer
Eric T Boder
University of Pennsylvania · USPhiladelphia University · USUniversity of Tennessee at Knoxville · US

Funding

VASCULAR RELATIONS OF BLOOD CELLS AND PROTEINSP01HL018208 · NHLBI · UNIVERSITY OF ROCHESTER · PI WAUGH, RICHARD E · 1985 to 2014
$24.7M
Controlling the Dynamics of Cell Adhesion using Engineered Integrin I-domainR01GM081444 · NIGMS · UNIVERSITY OF TENNESSEE KNOXVILLE · PI BODER, ERIC T · 2007 to 2011
$957k
NHLBI NIH HHS P01 HL18208NIGMS NIH HHS 5R01GM081444
6 · The paper itself

Abstract

The inserted (I) domain of αLβ2 integrin (LFA-1) contains the entire binding site of the molecule. It mediates both rolling and firm adhesion of leukocytes at sites of inflammation depending on the activation state of the integrin. The affinity change of the entire integrin can be mimicked by the I domain alone through mutations that affect the conformation of the molecule. High-affinity mutants of the I domain have been discovered previously using both rational design and directed evolution. We have found that binding affinity fails to dictate the behavior of I domain adhesion under shear flow. In order to better understand I domain adhesion, we have developed a novel panning method to separate yeast expressing a library of I domain variants on the surface by adhesion under flow. Using conditions analogous to those experienced by cells interacting with the post-capillary vascular endothelium, we have identified mutations supporting firm adhesion that are not found using typical directed evolution techniques that select for tight binding to soluble ligands. Mutants isolated using this method do not cluster with those found by sorting with soluble ligand. Furthermore, these mutants mediate shear-driven cell rolling dynamics decorrelated from binding affinity, as previously observed for I domains bearing engineered disulfide bridges to stabilize activated conformational states. Characterization of these mutants supports a greater understanding of the structure-function relationship of the αL I domain, and of the relationship between applied force and bioadhesion in a broader context.

Indexed as

Cell AdhesionFlow CytometryHumansLymphocyte Function-Associated Antigen-1Models, MolecularMutationProtein ConformationProtein Structure, TertiaryYeastsLymphocyte Function-Associated Antigen-1conformational regulationI domainrolling adhesionyeast displayαL integrin

Identifiers

PMID23788664
PMCPMC3711393
OpenAlexW2149851682

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.