Evidence map›Paper›PMID 23788625›Full record

ArticleGenes & development2013

A combinatorial regulatory signature controls terminal differentiation of the dopaminergic nervous system in C. elegans.

Maria Doitsidou, Nuria Flames, Irini Topalidou, Namiko Abe, Terry Felton, Laura Remesal, Tatiana Popovitchenko, Richard Mann, Martin Chalfie, Oliver Hobert

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
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  9. Review
  10. A molecular atlas of adultbioRxiv : the preprint server for biology · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Transcriptional regulation of neuronal identity.The European journal of neuroscience · 2022
    Review
  16. From Progenitors to Progeny: Shaping Striatal Circuit Development and Function.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Maria DoitsidouDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, NY 10032, USA. maria.doitsidou@uis.no
Nuria Flames
Irini Topalidou
Namiko Abe
Terry Felton
Laura Remesal
Tatiana Popovitchenko
Richard Mann
Martin Chalfie
Oliver Hobert
Howard Hughes Medical Institute · USColumbia University Irving Medical Center · USInstitute of Molecular Biology and Biophysics · RUColumbia University · USUniversity of Stavanger · NOUniversity of Washington · US

Funding

GENETIC ANALYSIS OF NEMATODE CELL DIFFERENTIATIONR01GM030997 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI CHALFIE, MARTIN · 1985 to 2017
$7.1M
LIM HOMEOBOX GENE LIM-6 IN MOTOR NEURON DIFFERENTIATIONR01NS039996 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Oliver Hobert · 2001 to 2026
$6.8M
Development and Function of an Adult Locomotion Circuit in DrosophilaR01NS070644 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANN, RICHARD S · 2010 to 2024
$6.2M
MOLECULAR GENETICS OF SEGMENT IDENTITYR01GM054510 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANN, RICHARD S · 1996 to 2015
$5.5M
Genetic analysis of dopaminergic neuron specification in C.elegansR01NS050266 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HOBERT, OLIVER · 2004 to 2013
$3.4M
Characterization of Hox transcription factor complexes using proteomicsF32GM099160 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ABE, NAMIKO · 2011 to 2013
$155k
Howard Hughes Medical InstituteNIGMS NIH HHS F32 GM099160NIGMS NIH HHS F32GM099160NIGMS NIH HHS R01 GM030997NIGMS NIH HHS R01 GM054510NIGMS NIH HHS R01GM054510NIGMS NIH HHS R01GM30997NINDS NIH HHS R01 NS039996NINDS NIH HHS R01NS039996-05NINDS NIH HHS R01 NS050266NINDS NIH HHS R01NS050266-03NINDS NIH HHS R01 NS070644
6 · The paper itself

Abstract

Terminal differentiation programs in the nervous system are encoded by cis-regulatory elements that control the expression of terminal features of individual neuron types. We decoded the regulatory information that controls the expression of five enzymes and transporters that define the terminal identity of all eight dopaminergic neurons in the nervous system of the Caenorhabditis elegans hermaphrodite. We show that the tightly coordinated, robust expression of these dopaminergic enzymes and transporters ("dopamine pathway") is ensured through a combinatorial cis-regulatory signature that is shared by all dopamine pathway genes. This signature is composed of an Ets domain-binding site, recognized by the previously described AST-1 Ets domain factor, and two distinct types of homeodomain-binding sites that act in a partially redundant manner. Through genetic screens, we identified the sole C. elegans Distalless/Dlx ortholog, ceh-43, as a factor that acts through one of the homeodomain sites to control both induction and maintenance of terminal dopaminergic fate. The second type of homeodomain site is a Pbx-type site, which is recognized in a partially redundant and neuron subtype-specific manner by two Pbx factors, ceh-20 and ceh-40, revealing novel roles of Pbx factors in the context of terminal neuron differentiation. Taken together, we revealed a specific regulatory signature and cognate, terminal selector-type transcription factors that define the entire dopaminergic nervous system of an animal. Dopaminergic neurons in the mouse olfactory bulb express a similar combinatorial transcription factor collective of Ets/Dlx/Pbx factors, suggesting deep phylogenetic conservation of dopaminergic regulatory programs.

Indexed as

Gene Expression Regulation, DevelopmentalAmino Acid SequenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell DifferentiationDNA Mutational AnalysisDopaminergic NeuronsMolecular Sequence DataNervous SystemRegulatory Elements, TranscriptionalSequence AlignmentCaenorhabditis elegans Proteinscis-regulatory motifdifferentiationdopamineeleganshomeodomainneuron

Identifiers

PMID23788625
PMCPMC3701194
OpenAlexW2169186378

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.