Evidence map›Paper›PMID 23788040›Full record

ArticleCell death & disease2013

Three-dimensional structure of Bax-mediated pores in membrane bilayers.

X-P Xu, D Zhai, E Kim, M Swift, J C Reed, N Volkmann, D Hanein

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 83 citations in OpenAlex.

  1. AFM to Study Pore-Forming Proteins.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Review
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  9. Apoptotic mitochondrial poration by a growing list of pore-forming BCL-2 family proteins.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

X-P XuBioinformatics and Systems Biology Program, Sanford-Burnham Medical Research Institute, La Jolla, CA 92037, USA.
D Zhai
E Kim
M Swift
J C Reed
N Volkmann
D Hanein
Sanford Burnham Prebys Medical Discovery Institute · US

Funding

Structure and function of Arp 2/3 complex--Subproject 4P01GM066311 · NIGMS · YALE UNIVERSITY · PI HANEIN, DORIT · 2003 to 2013
$16.8M
SPHINGOMYELIN SIGNALING PATHWAY IN FAS-INDUCED APOPTOSISP01CA069381 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI SALVESEN, GUY S. · 1996 to 2009
$16.8M
Ultrastructural Basis of Mechanotransduction in Matrix AdhesionsP01GM098412 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI HANEIN, DORIT · 2011 to 2015
$8.0M
Mitochondria and Apoptosis (revised GM60554)R01GM060554 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI REED, JOHN C · 2000 to 2009
$3.5M
NCI NIH HHS P01 CA069381NCI NIH HHS P01-CA069381NIGMS NIH HHS P01 GM066311NIGMS NIH HHS P01-GM066311NIGMS NIH HHS P01 GM098412NIGMS NIH HHS P01-GM098412NIGMS NIH HHS R01 GM060554NIGMS NIH HHS R01-GM60554
6 · The paper itself

Abstract

B-cell lymphoma 2 (Bcl-2)-associated X protein (Bax) is a member of the Bcl-2 protein family having a pivotal role in triggering cell commitment to apoptosis. Bax is latent and monomeric in the cytosol but transforms into its lethal, mitochondria-embedded oligomeric form in response to cell stress, leading to the release of apoptogenic factors such as cytochrome C. Here, we dissected the structural correlates of Bax membrane insertion while oligomerization is halted. This strategy was enabled through the use of nanometer-scale phospholipid bilayer islands (nanodiscs) the size of which restricts the reconstituted system to single Bax-molecule activity. Using this minimal reconstituted system, we captured structural correlates that precede Bax homo-oligomerization elucidating previously inaccessible steps of the core molecular mechanism by which Bcl-2 family proteins regulate membrane permeabilization. We observe that, in the presence of BH3 interacting domain death agonist (Bid) BH3 peptide, Bax monomers induce the formation of ~3.5-nm diameter pores and significantly distort the phospholipid bilayer. These pores are compatible with promoting release of ions as well as proteinaceous components, suggesting that membrane-integrated Bax monomers in the presence of Bid BH3 peptides are key functional units for the activation of the cell demolition machinery.

Indexed as

1,2-Dipalmitoylphosphatidylcholinebcl-2-Associated X ProteinBH3 Interacting Domain Death Agonist ProteinCell Membrane PermeabilityCryoelectron MicroscopyHumansLipid BilayersNanostructuresPeptide FragmentsPorosityProtein Structure, Quaternary1,2-DipalmitoylphosphatidylcholineBAX protein, humanbcl-2-Associated X ProteinBH3 Interacting Domain Death Agonist ProteinBID protein, humanLipid BilayersPeptide Fragments

Identifiers

PMID23788040
PMCPMC3702287
OpenAlexW2029625041

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.