Evidence map›Paper›PMID 23785398›Full record

ArticlePloS one2013

An O island 172 encoded RNA helicase regulates the motility of Escherichia coli O157:H7.

Yanmei Xu, Xuefang Xu, Ruiting Lan, Yanwen Xiong, Changyun Ye, Zhihong Ren, Li Liu, Ailan Zhao, Long-Fei Wu, Jianguo Xu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 50 citations in OpenAlex.

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  10. Morphological and genomic characteristics of two novel actinomycetes,Frontiers in cellular and infection microbiology · 2023
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  11. A novel phytopathogenFrontiers in cellular and infection microbiology · 2023
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  12. Article
  13. Large-scale ratcheting in a bacterial DEAH/RHA-type RNA helicase that modulates antibiotics susceptibility.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Article
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  17. Vagococcus zengguangii sp. nov., isolated from yak faeces.Journal of microbiology (Seoul, Korea) · 2021
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Yanmei XuState Key Laboratory for Infectious Disease Prevention and Control (China CDC), Beijing, PR China.
Xuefang Xu
Ruiting Lan
Yanwen Xiong
Changyun Ye
Zhihong Ren
Li Liu
Ailan Zhao
Long-Fei Wu
Jianguo Xu
Chinese Center For Disease Control and Prevention · CNNational Institute for Communicable Disease Control and Prevention · CNInstitut de Microbiologie de la Méditerranée · FRInstitute of Microbiology · CNUNSW Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterohaemorrhagic Escherichia coli (EHEC) O157:H7 is a major cause of zoonotic food- and water-borne intestinal infections worldwide with clinical consequences ranging from mild diarrhoea to hemolytic uraemic syndrome. The genome of EHEC O157:H7 contains many regions of unique DNA that are referred to as O islands including the Shiga toxin prophages and pathogenicity islands encoding key virulence factors. However many of these O islands are of unknown function. In this study, genetic analysis was conducted on OI-172 which is a 44,434 bp genomic island with 27 open reading frames. Comparative genome analysis showed that O1-72 is a composite island with progressive gain of genes since O157:H7 evolved from its ancestral O55:H7. A partial OI-172 island was also found in 2 unrelated E. coli strains and 2 Salmonella strains. OI-172 encodes several putative helicases, one of which (Z5898) is a putative DEAH box RNA helicase. To investigate the function of Z5898, a deletion mutant (EDL933ΔZ5898) was constructed in the O157:H7 strain EDL933. Comparative proteomic analysis of the mutant with the wild-type EDL933 found that flagellin was down-regulated in the Z5898 mutant. Motility assay showed that EDL933ΔZ5898 migrated slower than the wild-type EDL933 and electron microscopy found no surface flagella. Quantitative reverse transcription PCR revealed that the fliC expression of EDL933ΔZ5898 was significantly lower while the expression of its upstream regulator gene, fliA, was not affected. Using a fliA and a fliC promoter - green fluorescent protein fusion contruct, Z5898 was found to affect only the fliC promoter activity. Therefore, Z5898 regulates the flagella based motility by exerting its effect on fliC. We conclude that OI-172 is a motility associated O island and hereby name it the MAO island.

Indexed as

Genomic IslandsAmino Acid MotifsAmino Acid SequenceConserved SequenceEscherichia coli O157Escherichia coli ProteinsFlagellinGene Expression Regulation, BacterialGene OrderRNA HelicasesSequence DeletionTranscription, GeneticEscherichia coli ProteinsFlagellinRNA Helicases

Identifiers

PMID23785398
PMCPMC3681947
OpenAlexW1998007473

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.