Evidence map›Paper›PMID 23781802›Full record

ArticleThe Journal of chemical physics2013

The electrostatic response of water to neutral polar solutes: implications for continuum solvent modeling.

Hari S Muddana, Neil V Sapra, Andrew T Fenley, Michael K Gilson

Erratum issuedAbstract read
In one paragraph

Article in The Journal of chemical physics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Enhanced semiempirical QM methods for biomolecular interactions.Computational and structural biotechnology journal · 2015
    Review
  6. Introducing Charge Hydration Asymmetry into the Generalized Born Model.Journal of chemical theory and computation · 2014
    Article
  7. The SAMPL4 host-guest blind prediction challenge: an overview.Journal of computer-aided molecular design · 2014
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Hari S MuddanaSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California 92093-0736, USA.
Neil V Sapra
Andrew T Fenley
Michael K Gilson

Funding

National Biomedical Computation Resource - Competitive Revision SupplementP41GM103426 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AMARO, ROMMIE E · 2012 to 2019
$14.0M
THEORY AND MODELING OF NONCOVALENT BINDINGR01GM061300 · NIGMS · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI GILSON, MICHAEL K. · 2000 to 2021
$7.2M
NIGMS NIH HHS GM61300NIGMS NIH HHS P41 GM103426NIGMS NIH HHS R01 GM061300
6 · The paper itself

Abstract

Continuum solvation models are widely used to estimate the hydration free energies of small molecules and proteins, in applications ranging from drug design to protein engineering, and most such models are based on the approximation of a linear dielectric response by the solvent. We used explicit-water molecular dynamics simulations with the TIP3P water model to probe this linear response approximation in the case of neutral polar molecules, using miniature cucurbituril and cyclodextrin receptors and protein side-chain analogs as model systems. We observe supralinear electrostatic solvent responses, and this nonlinearity is found to result primarily from waters' being drawn closer and closer to the solutes with increased solute-solvent electrostatic interactions; i.e., from solute electrostriction. Dielectric saturation and changes in the water-water hydrogen bonding network, on the other hand, play little role. Thus, accounting for solute electrostriction may be a productive approach to improving the accuracy of continuum solvation models.

Indexed as

Cucurbit(n)urilsCyclodextrinsMacrocyclic CompoundsModels, MolecularProteinsSolventsStatic ElectricityWaterCucurbit(n)urilsCyclodextrinsMacrocyclic CompoundsProteinsSolventsWater

Identifiers

PMID23781802
PMCPMC3695974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.