Evidence map›Paper›PMID 23779107›Full record

ArticleThe Journal of biological chemistry2013

Structural and functional characterization of Pseudomonas aeruginosa AlgX: role of AlgX in alginate acetylation.

Laura M Riley, Joel T Weadge, Perrin Baker, Howard Robinson, Jeroen D C Codée, Peter A Tipton, Dennis E Ohman, P Lynne Howell

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Review
  3. Applying a polysaccharide lyase fromApplied and environmental microbiology · 2025
    Article
  4. Advances in alginate biosynthesis: regulation and production inFrontiers in bioengineering and biotechnology · 2025
    Review
  5. Plant Cell Wall PolysaccharidePlants (Basel, Switzerland) · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Laura M RileyProgram in Molecular Structure and Function, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada.
Joel T Weadge
Perrin Baker
Howard Robinson
Jeroen D C Codée
Peter A Tipton
Dennis E Ohman
P Lynne Howell
Hospital for Sick Children · CABrookhaven National Laboratory · USLeiden University · NLUniversity of Missouri · USVirginia Commonwealth University Medical Center · US

Funding

GENETICS OF ALGINATE BIOSYNTHESIS IN P. AERUGINOSAR01AI019146 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI OHMAN, DENNIS EDWARD · 1985 to 2011
$2.7M
Protein Complexes in Alginate MaturationR01GM081419 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI TIPTON, PETER A · 2008 to 2011
$847k
Activation of Alginate Genes in Pseudomonas aeruginosaR56AI019146 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI OHMAN, DENNIS EDWARD · 2006 to 2013
$682k
Pathogenic Mechanism for Lung Infection in Mucoid PseudomonasI01BX000477 · VA · VA VETERANS ADMINISTRATION HOSPITAL · PI OHMAN, DENNIS EDWARD, ZHOU, HUIPING · 2011 to 2025
–
BLRD VA I01 BX000477CIHR 13337NIAID NIH HHS AI-19146NIAID NIH HHS R01 AI019146NIAID NIH HHS R56 AI019146NIGMS NIH HHS GM081419NIGMS NIH HHS R01 GM081419
6 · The paper itself

Abstract

The exopolysaccharide alginate, produced by mucoid Pseudomonas aeruginosa in the lungs of cystic fibrosis patients, undergoes two different chemical modifications as it is synthesized that alter the properties of the polymer and hence the biofilm. One modification, acetylation, causes the cells in the biofilm to adhere better to lung epithelium, form microcolonies, and resist the effects of the host immune system and/or antibiotics. Alginate biosynthesis requires 12 proteins encoded by the algD operon, including AlgX, and although this protein is essential for polymer production, its exact role is unknown. In this study, we present the X-ray crystal structure of AlgX at 2.15 Å resolution. The structure reveals that AlgX is a two-domain protein, with an N-terminal domain with structural homology to members of the SGNH hydrolase superfamily and a C-terminal carbohydrate-binding module. A number of residues in the carbohydrate-binding module form a substrate recognition "pinch point" that we propose aids in alginate binding and orientation. Although the topology of the N-terminal domain deviates from canonical SGNH hydrolases, the residues that constitute the Ser-His-Asp catalytic triad characteristic of this family are structurally conserved. In vivo studies reveal that site-specific mutation of these residues results in non-acetylated alginate. This catalytic triad is also required for acetylesterase activity in vitro. Our data suggest that not only does AlgX protect the polymer as it passages through the periplasm but that it also plays a role in alginate acetylation. Our results provide the first structural insight for a wide group of closely related bacterial polysaccharide acetyltransferases.

Indexed as

AcetylationAlginatesBacterial ProteinsCrystallography, X-RayGlucuronic AcidHexuronic AcidsModels, MolecularMutationNuclear Magnetic Resonance, BiomolecularProtein ConformationPseudomonas aeruginosaAlginatesBacterial ProteinsGlucuronic AcidHexuronic AcidsAcetylationAlginateBiofilmExopolysaccharide BiosynthesisMicrobiologyPolysaccharideProtein StructureSGNH HydrolaseX-ray Crystallography

Identifiers

PMID23779107
PMCPMC3829321
OpenAlexW2141413828

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.