Evidence map›Paper›PMID 23778794›Full record

ReviewNature immunology2013

Innate immune recognition of the microbiota promotes host-microbial symbiosis.

Hiutung Chu, Sarkis K Mazmanian

Registry-linked trialOpen access · greenAbstract readReview
In one paragraph

Review in Nature immunology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05730569 (Description and Comparison of Biological Vulnerability in Small Vulnerable Newborns Versus Healthy Community Controls in Urban Burkina Faso), which is not on this map. Cited by 328 papers.

0numbers the graph read from it
0cells of the map it votes in
328citing papers in PubMed
16.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05730569 unknown statusnot on this mapstarted 2023, after this paper: background citation

Description and Comparison of Biological Vulnerability in Small Vulnerable Newborns Versus Healthy Community Controls in Urban Burkina Faso (DenBalo): Gut Microbiota, Immune System, and Breastmilk Assembly and Development in the First Days and Weeks of Life

TypeobservationalSponsorUniversity GhentRan2023 to 2024Enrolled140ConditionsPreterm Birth, Low Birth Weight, Small for Gestational Age at Delivery
3 · Its place in the literature

Who cites it

328 citing papers in PubMed, 635 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Observational
  9. Article
  10. Article
  11. Article
  12. Review
  13. Introduction to Oral Immunity.Advances in experimental medicine and biology · 2026
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. The role of gut microbiota and its metabolites in preventing oncogenesis.Frontiers in cell and developmental biology · 2026
    Review
  19. Review
  20. Article

268 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Hiutung ChuDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Sarkis K Mazmanian
California Institute of Technology · US

Funding

Protection from Mucosal Pathology by Gut Microflora during Experimental ColitisR01DK078938 · NIDDK · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI MAZMANIAN, SARKIS K · 2009 to 2020
$5.1M
Molecular Mechanisms that Shape Gut Microbial CommunitiesR01GM099535 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI MAZMANIAN, SARKIS K · 2012 to 2015
$1.6M
Protection from Mucosal Pathology by Gut Microbiota During Experimentas ColitisR56DK078938 · NIDDK · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI MAZMANIAN, SARKIS K · 2016 to 2016
$618k
NIDDK NIH HHS DK078938NIDDK NIH HHS R01 DK078938NIDDK NIH HHS R56 DK078938NIGMS NIH HHS GM099535NIGMS NIH HHS R01 GM099535
6 · The paper itself

Abstract

Pattern-recognition receptors (PRRs) are traditionally known to sense microbial molecules during infection to initiate inflammatory responses. However, ligands for PRRs are not exclusive to pathogens and are abundantly produced by the resident microbiota during normal colonization. Mechanism(s) that underlie this paradox have remained unclear. Recent studies reveal that gut bacterial ligands from the microbiota signal through PRRs to promote development of host tissue and the immune system, and protection from disease. Evidence from both invertebrate and vertebrate models reveals that innate immune receptors are required to promote long-term colonization by the microbiota. This emerging perspective challenges current models in immunology and suggests that PRRs may have evolved, in part, to mediate the bidirectional cross-talk between microbial symbionts and their hosts.

Indexed as

AnimalsGastrointestinal TractHost-Pathogen InteractionsHumansImmunity, InnateMetagenomeReceptors, Pattern RecognitionSymbiosisReceptors, Pattern Recognition

Identifiers

PMID23778794
PMCPMC4109969
OpenAlexW1965027165

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.