Evidence map›Paper›PMID 23776089›Full record

ArticleMolecular carcinogenesis2013

Genetic polymorphisms in RAD23B and XPC modulate DNA repair capacity and breast cancer risk in Puerto Rican women.

Julyann Pérez-Mayoral, Alba L Pacheco-Torres, Luisa Morales, Heidi Acosta-Rodríguez, Jaime L Matta, Julie Dutil

Open access · greenAbstract readComparative Study
In one paragraph

Article in Molecular carcinogenesis, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 3 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 3 syntheses or guidelines pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
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  7. Article
  8. Review
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  10. Review
  11. Polymorphisms in DNA repair pathway genes andCancer management and research · 2019
    Article
  12. Genomic Disparities in Breast Cancer Among Latinas.Cancer control : journal of the Moffitt Cancer Center · 2016
    Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Julyann Pérez-MayoralDepartment of Biochemistry, Ponce School of Medicine and Health Sciences, Ponce, Puerto Rico.
Alba L Pacheco-Torres
Luisa Morales
Heidi Acosta-Rodríguez
Jaime L Matta
Julie Dutil
Ponce Health Sciences University · PR

Funding

VIRAL SEQUENCES IN PEDIATRIC HIV INFECTION IN PRG12RR003050 · NCRR · PONCE SCHOOL OF MEDICINE · PI YASUHIRO, YAMAMURA · 1985 to 2011
$28.1M
Therapeutic Immunization in Monkey Model of AIDSS06GM008239 · NIGMS · PONCE SCHOOL OF MEDICINE · PI MATTA, JAIME L · 1989 to 2009
$21.5M
RISE Option III: Ponce School of Medicine MBRS-RISE ProgramR25GM082406 · NIGMS · PONCE SCHOOL OF MEDICINE · PI APPLEYARD, CAROLINE B · 2008 to 2021
$9.5M
PSM Moffitt Cancer Center PartnershipU56CA126379 · NCI · PONCE SCHOOL OF MEDICINE · PI TORRES-RUIZ, JOSE A · 2006 to 2011
$2.1M
Molecular epidemiology studies on the role of DNA repair breast cancerSC1CA157250 · NCI · PONCE SCHOOL OF MEDICINE · PI MATTA, JAIME L · 2010 to 2012
$1.0M
Defining breast cancer risk: the role of genetic variations in DNA repair genesSC2CA157248 · NCI · PONCE SCHOOL OF MEDICINE · PI DUTIL, JULIE · 2010 to 2012
$424k
NCI NIH HHS 1SC2CA157248-01NCI NIH HHS SC1 CA157250NCI NIH HHS SC1CA157250-01NCI NIH HHS SC2 CA157248NCI NIH HHS U56 CA126379NCI NIH HHS U56CA126379NCRR NIH HHS G12 RR003050NCRR NIH HHS RR003050NIGMS NIH HHS 1R25GM082406NIGMS NIH HHS R25 GM082406NIGMS NIH HHS S06 GM008239NIGMS NIH HHS S06GM008239
6 · The paper itself

Abstract

Studies have shown that DNA repair capacity (DRC) is significantly decreased in breast cancer patients, but the molecular causes of inter-individual variation in DRC are unknown. We hypothesized that genetic variation in the nucleotide excision repair pathway genes can modulate DRC and breast cancer risk in Puerto Rican women. A total of 228 breast cancer cases and 418 controls were recruited throughout Puerto Rico. For all study participants, eight single nucleotide polymorphisms (SNPs) in the genes XPC, XPD, and RAD23B were genotyped using a TaqMan PCR, and the DRC levels of UV induced-DNA damage was measured in peripheral lymphocytes using a host cell reactivation assay. After adjustment for confounders, RAD23B rs1805329 (Ala249Val) was found to be significantly associated with breast cancer risk under all models tested (P < 0.001). There was also a significant association between breast cancer risk and RAD23B rs10739234 (intronic) under the recessive model (P = 0.003, OR: 2.72, 95% CI: 1.40-5.30). In cases, there was a statistically significant difference in mean DRC per genotype for RAD23B rs1805329 (P < 0.001) and XPC rs2607775 (P = 0.002). When we modeled the combined effect of multiple SNPs that each independently affected DRC on cancer risk, we observed incremental augmentations in risk with increasing number of risk genotypes at those loci (P overall model <0.001). The increase in adverse genotypes was also correlated with a progressive decrease in DRC values. Our data indicate an additive effect of the NER SNPs on DRC and breast cancer risk in Puerto Rican women.

Indexed as

Biomarkers, TumorBreast NeoplasmsCase-Control StudiesDNA-Binding ProteinsDNA RepairDNA Repair EnzymesFemaleGenetic Predisposition to DiseaseGenotypeHumansMiddle AgedNeoplasm StagingPolymerase Chain ReactionPolymorphism, Single NucleotidePrognosisPuerto RicoBiomarkers, TumorDNA-Binding ProteinsDNA Repair EnzymesERCC2 protein, humanRAD23B protein, humanXeroderma Pigmentosum Group D ProteinXPC protein, humanbreast cancer geneticsDNA repairnucleotide excision repair

Identifiers

PMID23776089
PMCPMC4104768
OpenAlexW1948354551

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.