Evidence map›Paper›PMID 23775086›Full record

ArticleThe Journal of biological chemistry2013

Biochemical characterization of Hpa2 and Hpa3, two small closely related acetyltransferases from Saccharomyces cerevisiae.

Vinaya Sampath, Bingsheng Liu, Stefan Tafrov, Madhusudhan Srinivasan, Robert Rieger, Emily I Chen, Rolf Sternglanz

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Metal transporter SLC39A14/ZIP14 modulates regulation between the gut microbiome and host metabolism.American journal of physiology. Gastrointestinal and liver physiology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Vinaya SampathDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York 11794, USA.
Bingsheng Liu
Stefan Tafrov
Madhusudhan Srinivasan
Robert Rieger
Emily I Chen
Rolf Sternglanz
Stony Brook University · USPharmac · NZ

Funding

YEAST HISTONE ACETYLATION GENES AND MUTANTSR01GM055641 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI STERNGLANZ, ROLF · 1997 to 2009
$2.6M
NIGMS NIH HHS R01 GM055641NIGMS NIH HHS R01 GM55641
6 · The paper itself

Abstract

Based on their sequences, the Saccharomyces cerevisiae Hpa2 and Hpa3 proteins are annotated as two closely related members of the Gcn5 acetyltransferase family. Here, we describe the biochemical characterization of Hpa2 and Hpa3 as bona fide acetyltransferases with different substrate specificities. Mutational and MALDI-TOF analyses showed that Hpa3 translation initiates primarily from Met-19 rather than the annotated start site, Met-1, with a minor product starting at Met-27. When expressed in Escherichia coli and assayed in vitro, Hpa2 and Hpa3 (from Met-19) acetylated histones and polyamines. Whereas Hpa2 acetylated histones H3 and H4 (at H3 Lys-14, H4 Lys-5, and H4 Lys-12), Hpa3 acetylated only histone H4 (at Lys-8). Additionally, Hpa2, but not Hpa3, acetylated certain small basic proteins. Hpa3, but not Hpa2, has been reported to acetylate D-amino acids, and we present results consistent with that. Overexpression of Hpa2 or Hpa3 is toxic to yeast cells. However, their deletions do not show any standard phenotypic defects. These results suggest that Hpa2 and Hpa3 are similar but distinct acetyltransferases that might have overlapping roles with other known acetyltransferases in vivo in acetylating histones and other small proteins.

Indexed as

AcetylationAcetyltransferasesAmino-Acid N-AcetyltransferaseAmino AcidsAmino Acid SequenceCodon, InitiatorElectrophoresis, Polyacrylamide GelHigh Mobility Group ProteinsHistone AcetyltransferasesHistonesIsoenzymesLysineMethionineMolecular Sequence DataMutationProtein MultimerizationAcetyltransferasesAmino-Acid N-AcetyltransferaseAmino AcidsCodon, InitiatorHigh Mobility Group ProteinsHistone AcetyltransferasesHistonesHpa2 protein, S cerevisiaeHpa3 protein, S cerevisiaeIsoenzymesLysineMethionineNHP10 protein, S cerevisiaePutrescineSaccharomyces cerevisiae ProteinsSpermidineSpermineAcetyltransferaseHistone AcetylaseHistone ModificationMass Spectrometry (MS)PolyaminesTranslation

Identifiers

PMID23775086
PMCPMC3724611
OpenAlexW1975779991

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.