Evidence map›Paper›PMID 23774526›Full record

ArticleThe Journal of investigative dermatology2014

Mutational landscape of basal cell carcinomas by whole-exome sequencing.

Shyam S Jayaraman, David J Rayhan, Salar Hazany, Michael S Kolodney

Abstract read
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In one paragraph

Article in The Journal of investigative dermatology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed.

  1. Trial
  2. Trial
  3. Review
  4. Does Basal Cell Carcinoma Arise from a Precursor Lesion?The Journal of investigative dermatology · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. International journal of molecular sciences · 2025
    Article
  9. Article
  10. Observational
  11. Article
  12. Article
  13. Contribution of Keratinocytes in Skin Cancer Initiation and Progression.International journal of molecular sciences · 2024
    Review
  14. Review
  15. Review
  16. Article
  17. Ultraviolet Radiation Biological and Medical Implications.Current issues in molecular biology · 2024
    Review
  18. Article
  19. Review
  20. Review

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shyam S JayaramanDivision of Dermatology, Carilion Clinic and Virginia Tech Carilion School of Medicine, Roanoke, Virginia, USA.
David J RayhanDivision of Dermatology, Harbor-UCLA Medical Center, Torrance, California, USA.
Salar HazanyDivision of Dermatology, Harbor-UCLA Medical Center, Torrance, California, USA.
Michael S KolodneyDivision of Dermatology, Carilion Clinic and Virginia Tech Carilion School of Medicine, Roanoke, Virginia, USA. Electronic address: mskolodney@carilionclinic.org.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent advances in sequencing technology allow genome-scale approaches to cancer mutation discovery. Such data-intensive methods have been applied to cutaneous squamous cell carcinomas (SCCs) and melanomas but have not, to our knowledge, been applied to basal cell carcinomas (BCCs). We used whole-exome sequencing to characterize the mutational landscape of sporadic BCCs. We show that BCCs are the most mutated type of human cancer. Tumors from anatomical regions with chronic UV exposure were associated with higher mutation rates than those with intermittent exposure. The majority of all mutations (75.7%) were UV signature. Using a conventional binomial probability model, several genes were found mutated significantly. However, this model assumes a uniform distribution of mutations throughout the genome. We also used a more stringent approach called InVEx that uses a permutation-based framework to pick drivers from passengers. After correction for multiple hypothesis testing, InVEx identified only PTCH1 (Patched 1) as having a significant functional mutation burden. We also found three genes, STAT5B, CRNKL1, and NEBL, with mutational hot spots at a single base in 3 of 12 tumors sequenced. Our findings support the central role of PTCH1 mutations in BCC genesis. Moreover, our discovery of the uniquely high number of mutations in this tumor may lend insight into its biological behavior.

Indexed as

Gene Expression Regulation, NeoplasticModels, GeneticAneuploidyBasal Cell CarcinomaExomeGene DosageGenome-Wide Association StudyHumansMutationPatched-1 ReceptorPatched ReceptorsReceptors, Cell SurfaceSkin NeoplasmsTumor Suppressor Protein p53Patched-1 ReceptorPatched ReceptorsPTCH1 protein, humanReceptors, Cell SurfaceTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID23774526

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.