Evidence map›Paper›PMID 23773966›Full record

ArticleGenomics2013

Genome-wide transcriptional profiling and enrichment mapping reveal divergent and conserved roles of Sko1 in the Candida albicans osmotic stress response.

Dawn H Marotta, Andre Nantel, Leonid Sukala, Jennifer R Teubl, Jason M Rauceo

Abstract read
In one paragraph

Article in Genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Mechanism of Candida pathogenesis: revisiting the vital drivers.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Review
  6. Article
  7. Frontiers in microbiology · 2020
    Article
  8. Deletion of theJournal of fungi (Basel, Switzerland) · 2019
    Article
  9. Article
  10. Article
  11. Stress-Activated Protein Kinases in Human Fungal Pathogens.Frontiers in cellular and infection microbiology · 2019
    Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dawn H MarottaDepartment of Science, John Jay College of the City University of New York (CUNY), New York, NY 10019, USA.
Andre Nantel
Leonid Sukala
Jennifer R Teubl
Jason M Rauceo

Funding

Yeast cell wall damage response pathwaysSC2GM089556 · NIGMS · JOHN JAY COLLEGE OF CRIMINAL JUSTICE · PI RAUCEO, JASON MALCOLM · 2010 to 2012
$465k
CIHRNIGMS NIH HHS SC2 GM089556NIGMS NIH HHS SC2 GM089556-01
6 · The paper itself

Abstract

Candida albicans maintains both commensal and pathogenic states in humans. Here, we have defined the genomic response to osmotic stress mediated by transcription factor Sko1. We performed microarray analysis of a sko1Δ/Δ mutant strain subjected to osmotic stress, and we utilized gene sequence enrichment analysis and enrichment mapping to identify Sko1-dependent osmotic stress-response genes. We found that Sko1 regulates distinct gene classes with functions in ribosomal synthesis, mitochondrial function, and vacuolar transport. Our in silico analysis suggests that Sko1 may recognize two unique DNA binding motifs. Our C. albicans genomic analyses and complementation studies in Saccharomyces cerevisiae showed that Sko1 is conserved as a regulator of carbohydrate metabolism, redox metabolism, and glycerol synthesis. Further, our real time-qPCR results showed that osmotic stress-response genes that are dependent on the kinase Hog1 also require Sko1 for full expression. Our findings reveal divergent and conserved aspects of Sko1-dependent osmotic stress signaling.

Indexed as

Gene Expression ProfilingBasic-Leucine Zipper Transcription FactorsCandida albicansComputer SimulationEvolution, MolecularFungal ProteinsGene Expression Regulation, FungalGenome, FungalMitochondriaMitogen-Activated Protein KinasesOsmoregulationPhylogenyPromoter Regions, GeneticRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsBasic-Leucine Zipper Transcription FactorsFungal ProteinsHOG1 protein, S cerevisiaeMitogen-Activated Protein KinasesRepressor ProteinsSaccharomyces cerevisiae ProteinsSKO1 protein, S cerevisiaeEnrichment mappingOsmotic stressSKO1Transcription factorYeast

Identifiers

PMID23773966
PMCPMC3907168

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.