Evidence map›Paper›PMID 23772365›Full record

ArticleFEBS open bio2012

Purification, characterization, molecular cloning and extracellular production of a phospholipase A1 from Streptomyces albidoflavus NA297.

Daisuke Sugimori, Kota Kano, Yusaku Matsumoto

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Daisuke SugimoriDepartment of Symbiotic Systems Science and Technology, Graduate School of Symbiotic Systems Science and Technology, Fukushima University, 1 Kanayagawa, Fukushima 960-1296, Japan.
Kota Kano
Yusaku Matsumoto
Fukushima University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel metal ion-independent phospholipase A1 of Streptomyces albidoflavus isolated from Japanese soil has been purified and characterized. The enzyme consists of a 33-residue N-terminal signal secretion sequence and a 269-residue mature protein with a deduced molecular weight of 27,199. Efficient and extracellular production of the recombinant enzyme was successfully achieved using Streptomyces lividans cells and an expression vector. A large amount (25 mg protein, 14.7 kU) of recombinant enzyme with high specific activity (588 U/mg protein) was purified by simple purification steps. The maximum activity was found at pH 7.2 and 50 °C. At pH 7.2, the enzyme preferably hydrolyzed phosphatidic acid and phosphatidylserine; however, the substrate specificity was dependent on the reaction pH. The enzyme hydrolyzed lysophosphatidylcholine and not triglyceride and the p-nitrophenyl ester of fatty acids. At the reaction equilibrium, the molar ratio of released free fatty acids (sn-1:sn-2) was 63:37. The hydrolysis of phosphatidic acid at 50 °C and pH 7.2 gave apparent V max and k cat values of 1389 μmol min(-1) mg protein(-1) and 630 s(-1), respectively. The apparent K m and k cat/K m values were 2.38 mM and 265 mM(-1) s(-1), respectively. Mutagenesis analysis showed that Ser11 is essential for the catalytic function of the enzyme and the active site may include residues Ser216 and His218.

Indexed as

CharacterizationCV, column volumeDLS, dynamic light scatteringDMPA, 1,2-Dimyristoyl-sn-glycero-3-phosphateDOPE, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamineDPPC, 1,2-Dipalmitoyl-sn-glycero-3-phosphocholineEcPLA1, phospholipase A1 from Escherichia coliEGGL, lecithin from egg yolkExpressionFFA, free fatty acidLPC, l-α-LysophosphatidylcholinePC, l-α-phosphatidylcholinePG, l-α-phosphatidylglycerolPhospholipase A1PI, l-α-phosphatidylinositolPLA1, phospholipase A1PLA2, phospholipase A2PLD, phospholipase DpNPB, p-nitrophenyl butyratepNPD, p-nitrophenyl decanoatepNPL, p-nitrophenyl lauratepNPO, p-nitrophenyl octanoatepNPP, p-nitrophenyl palmitatepNPS, p-nitrophenyl stearatePOPA, 1-Palmitoyl-2-oleoyl-sn-glycerol-3-phosphatePOPC, 1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphocholinePOPE, 1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolaminePOPG, 1-Palmitoyl-2-oleoyl-sn-glycero-3-phospho-rac-(1-glycerol)PS, l-α-phosphatidyl-l-serinePurificationSaEst, esterase of Streptomyces albus J1074SaPLA1, phospholipase A1 from Streptomyces albidoflavusSBL, lecithin from soybeanSMPLA1, phospholipase A1 from Serratia sp. MK1SsEst, esterase from S. scabiesStreptomyces albidoflavusSxPLA1, phospholipase A1 from Serratia sp. xjF1TSB, tryptic soy broth

Identifiers

PMID23772365
PMCPMC3678127
OpenAlexW1970212229

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.