Evidence map›Paper›PMID 23772067›Full record

ArticleJournal of bacteriology2013

Isolation and characterization of mutant Sinorhizobium meliloti NodD1 proteins with altered responses to luteolin.

Melicent C Peck, Robert F Fisher, Robert Bliss, Sharon R Long

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Surface Motility Regulation ofInternational journal of molecular sciences · 2022
    Article
  7. Article
  8. OnfD, an AraC-Type Transcriptional Regulator Encoded byApplied and environmental microbiology · 2020
    Article
  9. Symbiosis islands of Loteae-nodulatingMicrobial genomics · 2020
    Article
  10. Article
  11. Structural basis for regulation of rhizobial nodulation and symbiosis gene expression by the regulatory protein NolR.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Melicent C PeckDepartment of Medicine, Division of Infectious Diseases, University of California, San Francisco, California, USA.
Robert F Fisher
Robert Bliss
Sharon R Long
Stanford University · USTexas A&M University · USUniversity of California, San Francisco · US

Funding

Control of Symbiotic Gene Expression in Sinorhizobium melilotiR01GM093628 · NIGMS · STANFORD UNIVERSITY · PI LONG, SHARON R · 2010 to 2017
$7.0M
RHIZOBIUM NODULATION GENE EXPRESSION AND GENE PRODUCTSR01GM030962 · NIGMS · STANFORD UNIVERSITY · PI LONG, SHARON R · 1985 to 1992
–
NIGMS NIH HHS R01 GM093628NIGMS NIH HHS R01 GM30962
6 · The paper itself

Abstract

NodD1, a member of the NodD family of LysR-type transcriptional regulators (LTTRs), mediates nodulation (nod) gene expression in the soil bacterium Sinorhizobium meliloti in response to the plant-secreted flavonoid luteolin. We used genetic screens and targeted approaches to identify NodD1 residues that show altered responses to luteolin during the activation of nod gene transcription. Here we report four types of NodD1 mutants. Type I (NodD1 L69F, S104L, D134N, and M193I mutants) displays reduced or no activation of nod gene expression. Type II (NodD1 K205N) is constitutively active but repressed by luteolin. Type III (NodD1 L280F) demonstrates enhanced activity with luteolin compared to that of wild-type NodD1. Type IV (NodD1 D284N) shows moderate constitutive activity yet can still be induced by luteolin. In the absence of luteolin, many mutants display a low binding affinity for nod gene promoter DNA in vitro. Several mutants also show, as does wild-type NodD1, increased affinity for nod gene promoters with added luteolin. All of the NodD1 mutant proteins can homodimerize and heterodimerize with wild-type NodD1. Based on these data and the crystal structures of several LTTRs, we present a structural model of wild-type NodD1, identifying residues important for inducer binding, protein multimerization, and interaction with RNA polymerase at nod gene promoters.

Indexed as

AllelesBacterial ProteinsDNA, BacterialGene Expression Regulation, BacterialLuteolinModels, MolecularMutationProtein BindingProtein ConformationSinorhizobium melilotiTranscription FactorsBacterial ProteinsDNA, BacterialLuteolinTranscription Factors

Identifiers

PMID23772067
PMCPMC3754574
OpenAlexW2164331664

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.