Evidence map›Paper›PMID 23771890›Full record

ArticleThe Plant cell2013

Formation of a functional maize centromere after loss of centromeric sequences and gain of ectopic sequences.

Bing Zhang, Zhenling Lv, Junling Pang, Yalin Liu, Xiang Guo, Shulan Fu, Jun Li, Qianhua Dong, Hua-Jun Wu, Zhi Gao and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
10.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Review
  3. Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  4. Article
  5. The Genomics of Plant Satellite DNA.Progress in molecular and subcellular biology · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Recurrent establishment of de novo centromeres in the pericentromeric region of maize chromosome 3.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2017
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Recombination, Pairing, and Synapsis of Homologs during Meiosis.Cold Spring Harbor perspectives in biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Bing ZhangState Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.
Zhenling Lv
Junling Pang
Yalin Liu
Xiang Guo
Shulan Fu
Jun Li
Qianhua Dong
Hua-Jun Wu
Zhi Gao
Xiu-Jie Wang
Fangpu Han
Chinese Academy of Sciences · CNInstitute of Genetics and Developmental Biology · CNState Key Laboratory of Plant Genomics · CNUniversity of Missouri · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The maize (Zea mays) B centromere is composed of B centromere-specific repeats (ZmBs), centromere-specific satellite repeats (CentC), and centromeric retrotransposons of maize (CRM). Here we describe a newly formed B centromere in maize, which has lost CentC sequences and has dramatically reduced CRM and ZmBs sequences, but still retains the molecular features of functional centromeres, such as CENH3, H2A phosphorylation at Thr-133, H3 phosphorylation at Ser-10, and Thr-3 immunostaining signals. This new centromere is stable and can be transmitted to offspring through meiosis. Anti-CENH3 chromatin immunoprecipitation sequencing revealed that a 723-kb region from the short arm of chromosome 9 (9S) was involved in the formation of the new centromere. The 723-kb region, which is gene poor and enriched for transposons, contains two abundant DNA motifs. Genes in the new centromere region are still transcribed. The original 723-kb region showed a higher DNA methylation level compared with native centromeres but was not significantly changed when it was involved in new centromere formation. Our results indicate that functional centromeres may be formed without the known centromere-specific sequences, yet the maintenance of a high DNA methylation level seems to be crucial for the proper function of a new centromere.

Indexed as

CentromereChromatin ImmunoprecipitationChromosomes, PlantDNA MethylationDNA, PlantGenome, PlantImmunohistochemistryIn Situ Hybridization, FluorescenceMeiosisOligonucleotide Array Sequence AnalysisPlant ProteinsRepetitive Sequences, Nucleic AcidRetroelementsReverse Transcriptase Polymerase Chain ReactionSequence Analysis, DNASequence DeletionDNA, PlantPlant ProteinsRetroelements

Identifiers

PMID23771890
PMCPMC3723607
OpenAlexW2103183315

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.