ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2013
Identification and evolution of the silkworm helitrons and their contribution to transcripts.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 33 citations in OpenAlex.
- Impact of a horizontally transferred Helitron family on genome evolution in Xenopus laevis.Mobile DNA · 2025Article
- Article
- Discovery of numerous novel Helitron-like elements in eukaryote genomes using HELIANO.Nucleic acids research · 2024Article
- The Landscapes of Full-Length Transcripts and Splice Isoforms as Well as Transposons Exonization in the Lepidopteran Model System,Frontiers in genetics · 2021Article
- Amplification of miniature inverted-repeat transposable elements and the associated impact on gene regulation and alternative splicing in mulberry (Mobile DNA · 2019Article
- Characterization of a novelMobile DNA · 2019Article
- Helraiser intermediates provide insight into the mechanism of eukaryotic replicative transposition.Nature communications · 2018Article
- Horizontal transfer of a novel Helentron in insects.Molecular genetics and genomics : MGG · 2017Article
- A Helitron transposon reconstructed from bats reveals a novel mechanism of genome shuffling in eukaryotes.Nature communications · 2016Article
- Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies.Genome biology and evolution · 2016Article
- Non-canonical Helitrons inMobile DNA · 2016Article
- High evolutionary turnover of satellite families in Caenorhabditis.BMC evolutionary biology · 2015Article
- Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2015Review
- Differential pre-mRNA Splicing Alters the Transcript Diversity of Helitrons Between the Maize Inbred Lines.G3 (Bethesda, Md.) · 2015Article
- Article
- The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants.Mobile DNA · 2015Article
- Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi.BMC genomics · 2014Article
- Rolling-circle transposons catalyze genomic innovation in a mammalian lineage.Genome biology and evolution · 2014Article
- HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes.Proceedings of the National Academy of Sciences of the United States of America · 2014Article
- Article
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In this study, we developed a structure-based approach to identify Helitrons in four lepidopterans and systematically analysed Helitrons in the silkworm genome. We found that the content of Helitrons varied greatly among genomes. The silkworm genome harboured 67,555 Helitron-related sequences that could be classified into 21 families and accounted for ≈ 4.23% of the genome. Thirteen of the families were new. Three families were putatively autonomous and included the replication initiator motif and helicase domain. The silkworm Helitrons were widely and randomly distributed in the genome. Most Helitron families radiated within the past 2 million years and experienced a single burst of expansion. These Helitron families captured 3724 gene fragments and contributed to at least 1.4% of the silkworm full-length cDNAs, suggesting important roles of Helitrons in the evolution of the silkworm genes. In addition, we found that some new Helitrons were generated by combinations of other Helitrons. Overall, the results presented in this study provided insights into the generation and evolution of Helitron transposons and their contribution to transcripts.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.