Evidence map›Paper›PMID 23771490›Full record

ArticleNeurology2013

Genetic risk variants in African Americans with multiple sclerosis.

Noriko Isobe, Pierre-Antoine Gourraud, Hanne F Harbo, Stacy J Caillier, Adam Santaniello, Pouya Khankhanian, Martin Maiers, Stephen Spellman, Nezih Cereb, SooYoung Yang and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Neurology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Immune-mediated genesis of multiple sclerosis.Journal of translational autoimmunity · 2020
    Review
  15. Article
  16. Article
  17. An MRI evaluation of grey matter damage in African Americans with MS.Multiple sclerosis and related disorders · 2018
    Article
  18. Genetics of Multiple Sclerosis: An Overview and New Directions.Cold Spring Harbor perspectives in medicine · 2018
    Review
  19. Review
  20. Multiple Sclerosis in Latin Americans: Genetic Aspects.Current neurology and neuroscience reports · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 2 countries.

Noriko IsobeDepartment of Neurology, School of Medicine, University of California, San Francisco, CA, USA.
Pierre-Antoine Gourraud
Hanne F Harbo
Stacy J Caillier
Adam Santaniello
Pouya Khankhanian
Martin Maiers
Stephen Spellman
Nezih Cereb
SooYoung Yang
Marcelo J Pando
Laura Piccio
Anne H Cross
Philip L De Jager
Bruce A C Cree
Stephen L Hauser
Jorge R Oksenberg
Harvard University · USHistogen (United States) · USWashington University in St. Louis · USBrigham and Women's Hospital · USOslo University Hospital · NOStanford University · USNational Marrow Donor Program · USUniversity of Oslo · NO

Funding

Gene Expression and Regulatory Networks in Human LeukocytesRC2GM093080 · NIGMS · HARVARD MEDICAL SCHOOL · PI BENOIST, CHRISTOPHE O., MATHIS, DIANE J · 2009 to 2010
$7.3M
Immunogenetic Studies in Multiple SclerosisR01NS046297 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI OKSENBERG, JORGE R. · 2003 to 2013
$3.5M
The contribution of common and rare variants to autoimmunity in African AmericansR01NS076492 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI OKSENBERG, JORGE R. · 2011 to 2014
$1.3M
NIGMS NIH HHS RC2 GM093080NINDS NIH HHS R01NS046297NINDS NIH HHS R01NS076492PHS HHS HHSH234200637020C
6 · The paper itself

Abstract

objectivesTo assess the association of established multiple sclerosis (MS) risk variants in 3,254 African Americans (1,162 cases and 2,092 controls).

methodsHuman leukocyte antigen (HLA)-DRB1, HLA-DQB1, and HLA-A alleles were typed by molecular techniques. Single nucleotide polymorphism (SNP) genotyping was conducted for 76 MS-associated SNPs and 52 ancestry informative marker SNPs selected throughout the genome. Self-declared ancestry was refined by principal component analysis of the ancestry informative marker SNPs. An ancestry-adjusted multivariate model was applied to assess genetic associations.

resultsThe following major histocompatibility complex risk alleles were replicated: HLA-DRB1*15:01 (odds ratio [OR] = 2.02 [95% confidence interval: 1.54-2.63], p = 2.50e-07), HLA-DRB1*03:01 (OR = 1.58 [1.29-1.94], p = 1.11e-05), as well as HLA-DRB1*04:05 (OR = 2.35 [1.26-4.37], p = 0.007) and the African-specific risk allele of HLA-DRB1*15:03 (OR = 1.26 [1.05-1.51], p = 0.012). The protective association of HLA-A*02:01 was confirmed (OR = 0.72 [0.55-0.93], p = 0.013). None of the HLA-DQB1 alleles were associated with MS. Using a significance threshold of p < 0.01, outside the major histocompatibility complex region, 8 MS SNPs were also found to be associated with MS in African Americans.

conclusionMS genetic risk in African Americans only partially overlaps with that of Europeans and could explain the difference of MS prevalence between populations.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdultAge of OnsetAllelesBlack or African AmericanCase-Control StudiesFemaleGenetic Association StudiesGenotypeHLA-A AntigensHLA-DQ beta-ChainsHLA-DRB1 ChainsHumansMaleMiddle AgedHLA-A AntigensHLA-DQB1 antigenHLA-DQ beta-ChainsHLA-DRB1 Chains

Identifiers

PMID23771490
PMCPMC3770164
OpenAlexW2150606035

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.