Evidence map›Paper›PMID 23766944›Full record

ArticleJournal of pathology informatics2013

Quantifying local heterogeneity via morphologic scale: Distinguishing tumoral from stromal regions.

Andrew Janowczyk, Sharat Chandran, Anant Madabhushi

Abstract read
In one paragraph

Article in Journal of pathology informatics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Beyond immune density: critical role of spatial heterogeneity in estrogen receptor-negative breast cancer.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2015
    Article
  4. Mapping spatial heterogeneity in the tumor microenvironment: a new era for digital pathology.Laboratory investigation; a journal of technical methods and pathology · 2015
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Andrew JanowczykDepartment of Computer Science, IIT Bombay, India, USA ; Department of Biomedical Engineering, Case Western Reserve University, USA.
Sharat Chandran
Anant Madabhushi

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionThe notion of local scale was introduced to characterize varying levels of image detail so that localized image processing tasks could be performed while simultaneously yielding a globally optimal result. In this paper, we have presented the methodological framework for a novel locally adaptive scale definition, morphologic scale (MS), which is different from extant local scale definitions in that it attempts to characterize local heterogeneity as opposed to local homogeneity.

methodsAt every point of interest, the MS is determined as a series of radial paths extending outward in the direction of least resistance, navigating around obstructions. Each pixel can then be directly compared to other points of interest via a rotationally invariant quantitative feature descriptor, determined by the application of Fourier descriptors to the collection of these paths.

resultsOUR GOAL IS TO DISTINGUISH TUMOR AND STROMAL TISSUE CLASSES IN THE CONTEXT OF FOUR DIFFERENT DIGITIZED PATHOLOGY DATASETS: prostate tissue microarrays (TMAs) stained with hematoxylin and eosin (HE) (44 images) and TMAs stained with only hematoxylin (H) (44 images), slide mounts of ovarian H (60 images), and HE breast cancer (51 images) histology images. Classification performance over 50 cross-validation runs using a Bayesian classifier produced mean areas under the curve of 0.88 ± 0.01 (prostate HE), 0.87 ± 0.02 (prostate H), 0.88 ± 0.01 (ovarian H), and 0.80 ± 0.01 (breast HE).

conclusionFor each dataset listed in Table 3, we randomly selected 100 points per image, and using the procedure described in Experiment 1, we attempted to separate them as belonging to stroma or epithelium.

Indexed as

Heterogeneitylocal morphological scaletumor identification

Identifiers

PMID23766944
PMCPMC3678744

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