Evidence map›Paper›PMID 23766510›Full record

ArticleThe Journal of biological chemistry2013

Crucial role for phylogenetically conserved cytoplasmic loop 3 in ABCC4 protein expression.

Satish B Cheepala, Ju Bao, Deepa Nachagari, Daxi Sun, Yao Wang, Tao P Zhong, Tao Zhong, Anjaparavanda P Naren, Jie Zheng, John D Schuetz

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. An ABC of ciliogenesis.Nature cell biology · 2014
    Article
  5. Article
4 · The record

Corrections and comments

  • Erratum issued
    Zhong, Tao [corrected to Zhong, Tao P]
5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Satish B CheepalaDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Ju Bao
Deepa Nachagari
Daxi Sun
Yao Wang
Tao P Zhong
Tao Zhong
Anjaparavanda P Naren
Jie Zheng
John D Schuetz
St. Jude Children's Research Hospital · USUniversity of Tennessee Health Science Center · USVanderbilt University · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Inhibition of an apical cAMP transporter (MRP4) in the gut induces diarrheaR01DK080834 · NIDDK · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI Anjaparavanda P Naren · 2009 to 2026
$6.8M
MRP4 IN DRUG SENSITIVITY AND PHYSIOLOGYR01GM060904 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHUETZ, JOHN D · 2000 to 2012
$4.7M
LPA2 receptor-containing complexes in regulating secretory diarrheaR01DK093045 · NIDDK · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI NAREN, ANJAPARAVANDA P · 2011 to 2019
$3.0M
Structural investigation of focal adhesion formation and disassemblyR01GM100909 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHENG, JIE J. · 2012 to 2015
$1.5M
Mechanisms of Different Wnt SignalsR01GM081492 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI ZHENG, JIE J. · 2007 to 2010
$1.2M
NCI NIH HHS CA21865NCI NIH HHS P30 CA021765NCI NIH HHS P30CA21745NIDDK NIH HHS DK080834NIDDK NIH HHS DK093045NIDDK NIH HHS R01 DK080834NIDDK NIH HHS R01 DK093045NIGMS NIH HHS 2R01GM60904NIGMS NIH HHS R01 GM060904NIGMS NIH HHS R01 GM081492NIGMS NIH HHS R01 GM100909
6 · The paper itself

Abstract

The ABC transporter ABCC4 is recognized as an ATP-dependent exporter of endogenous substances as well as an increasing variety of anionic chemotherapeutics. A loss-of-function variant of zebrafish Abcc4 was identified with a single amino acid substitution in the cytoplasmic loop T804M. Because this substituted amino acid is highly conserved among ABCC4 orthologs and is located in cytoplasmic loop 3 (CL3), we investigated the impact of this mutation on human and zebrafish Abcc4 expression. We demonstrate that zebrafish Abcc4 T804M or human ABCC4 T796M exhibit substantially reduced expression, coupled with impaired plasma membrane localization. To understand the molecular basis for the localization defect, we developed a homology model of zebrafish Abcc4. The homology model suggested that the bulky methionine substitution disrupted side-chain contacts. Molecular dynamic simulations of a fragment of human or zebrafish CL3 containing a methionine substitution indicated altered helicity coupled with reduced thermal stability. Trifluoroethanol challenge coupled with circular dichroism revealed that the methionine substitution disrupted the ability of this fragment of CL3 to readily form an α-helix. Furthermore, expression and plasma membrane localization of these mutant ABCC4/Abcc4 proteins are mostly rescued by growing cells at subphysiological temperatures. Because the cystic fibrosis transmembrane conductance regulator (ABCC7) is closely related to ABCC4, we extended this by engineering certain pathogenic CFTR-CL3 mutations, and we showed they destabilized human and zebrafish ABCC4. Altogether, our studies provide the first evidence for a conserved domain in CL3 of ABCC4 that is crucial in ensuring its proper plasma membrane localization.

Indexed as

PhylogenyAmino Acid SequenceAnimalsATP-Binding Cassette, Sub-Family C ProteinsCell LineCytoplasmHumansMiceModels, MolecularMolecular Sequence DataNIH 3T3 CellsSequence Homology, Amino AcidZebrafishABCC4 protein, humanATP-Binding Cassette, Sub-Family C ProteinsABC TransporterCytoplasmic Loop 3Homology ModelingMolecular ModelingMrp4Multidrug TransportersZebrafish

Identifiers

PMID23766510
PMCPMC3829313
OpenAlexW2075822253

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.