Evidence map›Paper›PMID 23765294›Full record

ArticleJournal of synchrotron radiation2013

Integrated nonlinear optical imaging microscope for on-axis crystal detection and centering at a synchrotron beamline.

Jeremy T Madden, Scott J Toth, Christopher M Dettmar, Justin A Newman, Robert A Oglesbee, Hartmut G Hedderich, R Michael Everly, Michael Becker, Judith A Ronau, Susan K Buchanan and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of synchrotron radiation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Low-doseIUCrJ · 2020
    Article
  4. Article
  5. The complex analysis of X-ray mesh scans for macromolecular crystallography.Acta crystallographica. Section D, Structural biology · 2018
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Intercalating dyes for enhanced contrast in second-harmonic generation imaging of protein crystals.Acta crystallographica. Section D, Biological crystallography · 2015
    Article
  13. Imaging local electric fields produced upon synchrotron X-ray exposure.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. Identifying, studying and making good use of macromolecular crystals.Acta crystallographica. Section F, Structural biology communications · 2014
    Article
  15. Femtosecond crystallography of membrane proteins in the lipidic cubic phase.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2014
    Review
  16. Kinetic trapping of metastable amino acid polymorphs.Journal of the American Chemical Society · 2014
    Article
  17. Exploiting Microbeams for Membrane Protein Structure Determination.Advances in experimental medicine and biology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Jeremy T MaddenDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47906, USA.
Scott J Toth
Christopher M Dettmar
Justin A Newman
Robert A Oglesbee
Hartmut G Hedderich
R Michael Everly
Michael Becker
Judith A Ronau
Susan K Buchanan
Vadim Cherezov
Marie E Morrow
Shenglan Xu
Dale Ferguson
Oleg Makarov
Chittaranjan Das
Robert Fischetti
Garth J Simpson
Purdue University West Lafayette · USArgonne National Laboratory · USNational Institutes of Health · USScripps Research Institute · US

Funding

JCSG Center:Innovative Membrane Protein Technology (RMI)P50GM073197 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2004 to 2013
$26.8M
structural characterization of bacterial secretion channelsZIADK036139 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BUCHANAN, SUSAN · 2009 to 2025
$19.3M
Structural characterization of outer membrane proteins from Yersinia pestisZIADK011011 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BUCHANAN, SUSAN · 2009 to 2025
$19.1M
Nonlinear Optical Imaging for Guiding Protein Structure DeterminationR01GM103401 · NIGMS · PURDUE UNIVERSITY · PI SIMPSON, GARTH JASON · 2012 to 2018
$1.7M
Intramural NIH HHSNCI NIH HHS Y1-CO-1020NIGMS NIH HHS P50 GM073197NIGMS NIH HHS R01 GM103401NIGMS NIH HHS R01GM-103401NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

Nonlinear optical (NLO) instrumentation has been integrated with synchrotron X-ray diffraction (XRD) for combined single-platform analysis, initially targeting applications for automated crystal centering. Second-harmonic-generation microscopy and two-photon-excited ultraviolet fluorescence microscopy were evaluated for crystal detection and assessed by X-ray raster scanning. Two optical designs were constructed and characterized; one positioned downstream of the sample and one integrated into the upstream optical path of the diffractometer. Both instruments enabled protein crystal identification with integration times between 80 and 150 µs per pixel, representing a ∼10(3)-10(4)-fold reduction in the per-pixel exposure time relative to X-ray raster scanning. Quantitative centering and analysis of phenylalanine hydroxylase from Chromobacterium violaceum cPAH, Trichinella spiralis deubiquitinating enzyme TsUCH37, human κ-opioid receptor complex kOR-T4L produced in lipidic cubic phase (LCP), intimin prepared in LCP, and α-cellulose samples were performed by collecting multiple NLO images. The crystalline samples were characterized by single-crystal diffraction patterns, while α-cellulose was characterized by fiber diffraction. Good agreement was observed between the sample positions identified by NLO and XRD raster measurements for all samples studied.

Indexed as

SynchrotronsCrystallizationHumansMicroscopy, FluorescenceProteinsX-Ray DiffractionProteinscenteringLCPmicroscopyNLOproteinSHGSONICCTPE-UVFtwo-photonXRD

Identifiers

PMID23765294
PMCPMC3682636
OpenAlexW2144986918

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.