Evidence map›Paper›PMID 23764425›Full record

ArticleCancer discovery2013

Systematic interrogation of 3q26 identifies TLOC1 and SKIL as cancer drivers.

Daniel Hagerstrand, Alexander Tong, Steven E Schumacher, Nina Ilic, Rhine R Shen, Hiu Wing Cheung, Francisca Vazquez, Yashaswi Shrestha, So Young Kim, Andrew O Giacomelli and 11 more

Abstract read
In one paragraph

Article in Cancer discovery, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 77 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Cancer innovation · 2025
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. The 3q OncogeneInternational journal of molecular sciences · 2023
    Article
  9. Article
  10. Review
  11. Article
  12. Effect of the 3q26-coding oncogeneFrontiers in physiology · 2022
    Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Expression ofCancers · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 1 country.

Daniel Hagerstrand1Departments of Medical Oncology and 2Cancer Biology; 3Center for Cancer Genome Discovery, Dana-Farber Cancer Institute;4Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston; 5Broad Institute of Harvard and MIT, Cambridge, Massachusetts; and 6Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina.
Alexander Tong
Steven E Schumacher
Nina Ilic
Rhine R Shen
Hiu Wing Cheung
Francisca Vazquez
Yashaswi Shrestha
So Young Kim
Andrew O Giacomelli
Joseph Rosenbluh
Anna C Schinzel
Nicole A Spardy
David A Barbie
Craig H Mermel
Barbara A Weir
Levi A Garraway
Pablo Tamayo
Jill P Mesirov
Rameen Beroukhim
William C Hahn
Dana-Farber Cancer Institute · USDuke University Hospital · USBrigham and Women's Hospital · USBroad Institute · USHarvard University · US

Funding

VIRAL ONCOPROTEIN PERTURBATION OF RB/E2F PATHWAYP01CA050661 · NCI · DANA-FARBER CANCER INSTITUTE · PI HAHN, WILLIAM C. · 1989 to 2013
$35.8M
Signatures of Kinase Activation in Cancer (MIT consortium)U54CA112962 · NCI · DANA-FARBER CANCER INSTITUTE · PI GOLUB, TODD R. · 2004 to 2014
$24.2M
The Dana-Farber Cancer Institute Cancer Target Discovery and Development CenterU01CA176058 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2013 to 2021
$7.8M
GENOMIC ANALYSIS OF MEDULLOBLASTOMASR01CA109467 · NCI · CHILDREN'S HOSPITAL BOSTON · PI MESIROV, JILL P., POMEROY, SCOTT LOREN · 2004 to 2015
$7.3M
Functional Annotation of Cancer Genomes: TCGA, Glioblastoma and Ovarian CancerRC2CA148268 · NCI · DANA-FARBER CANCER INST · PI CHIN, LYNDA, HAHN, WILLIAM C. · 2009 to 2012
$6.6M
Supporting Integrative Genomic Analysis Users with GenePatternR01GM074024 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P. · 2005 to 2019
$6.6M
Regulation and function of IKKe in breast cancer initiation and maintenanceR01CA130988 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2009 to 2018
$3.5M
Molecular Signatures to Characterize the Oncogenic State of Individual TumorsR01CA154480 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TAMAYO, PABLO · 2011 to 2015
$2.0M
Synthetic-Lethal-Based Targeted Therapy for Oncogenic KRAS-Driven CancerK08CA138918 · NCI · DANA-FARBER CANCER INST · PI BARBIE, DAVID A · 2010 to 2014
$891k
NCI NIH HHS K08 CA138918NCI NIH HHS P01 CA050661NCI NIH HHS R01 CA109467NCI NIH HHS R01 CA130988NCI NIH HHS R01 CA154480NCI NIH HHS RC2 CA148268NCI NIH HHS U01 CA176058NCI NIH HHS U54 CA112962NIGMS NIH HHS R01 GM074024
6 · The paper itself

Abstract

unlabelled3q26 is frequently amplified in several cancer types with a common amplified region containing 20 genes. To identify cancer driver genes in this region, we interrogated the function of each of these genes by loss- and gain-of-function genetic screens. Specifically, we found that TLOC1 (SEC62) was selectively required for the proliferation of cell lines with 3q26 amplification. Increased TLOC1 expression induced anchorage-independent growth, and a second 3q26 gene, SKIL (SNON), facilitated cell invasion in immortalized human mammary epithelial cells. Expression of both TLOC1 and SKIL induced subcutaneous tumor growth. Proteomic studies showed that TLOC1 binds to DDX3X, which is essential for TLOC1-induced transformation and affected protein translation. SKIL induced invasion through upregulation of SLUG (SNAI2) expression. Together, these studies identify TLOC1 and SKIL as driver genes at 3q26 and more broadly suggest that cooperating genes may be coamplified in other regions with somatic copy number gain. SIGNIFICANCE: These studies identify TLOC1 and SKIL as driver genes in 3q26. These observations provide evidence that regions of somatic copy number gain may harbor cooperating genes of different but complementary functions.

Indexed as

Breast NeoplasmsCarcinoma, Non-Small-Cell LungCell Line, TumorCell ProliferationChromosomes, Human, Pair 3DEAD-box RNA HelicasesDNA Copy Number VariationsEpithelial-Mesenchymal TransitionFemaleGene AmplificationGene Expression Regulation, NeoplasticHumansIntracellular Signaling Peptides and ProteinsLung NeoplasmsMammary Glands, HumanMembrane Transport ProteinsDDX3X protein, humanDEAD-box RNA HelicasesIntracellular Signaling Peptides and ProteinsMembrane Transport ProteinsProto-Oncogene ProteinsRNA, Small InterferingSEC62 protein, humanSKIL protein, humanSNAI1 protein, humanSNAI2 protein, humanSnail Family Transcription FactorsTranscription Factors

Identifiers

PMID23764425
PMCPMC3770815
OpenAlexW2128655510

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.