Evidence map›Paper›PMID 23763294›Full record

ArticleAlcoholism, clinical and experimental research2013

Genetic resistance to liver fibrosis on A/J mouse chromosome 17.

David A DeSantis, Peter Lee, Stephanie K Doerner, Chih-Wei Ko, Jean H Kawasoe, Annie E Hill-Baskin, Sheila R Ernest, Prerna Bhargava, Kyu Yeon Hur, Gail A Cresci and 5 more

Open access · greenAbstract read
In one paragraph

Article in Alcoholism, clinical and experimental research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Genetic determinants of atherosclerosis, obesity, and energy balance in consomic mice.Mammalian genome : official journal of the International Mammalian Genome Society · 2014
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

David A DeSantisDepartment of Nutrition, Case Western Reserve University School of Medicine, Cleveland, Ohio.
Peter Lee
Stephanie K Doerner
Chih-Wei Ko
Jean H Kawasoe
Annie E Hill-Baskin
Sheila R Ernest
Prerna Bhargava
Kyu Yeon Hur
Gail A Cresci
Michele T Pritchard
Chih-Hao Lee
Laura E Nagy
Joseph H Nadeau
Colleen M Croniger
Case Western Reserve University · USHarvard University · USCleveland Clinic · USInstitute for Systems Biology · USUniversity of Kansas · US

Funding

Nuclear Receptors in Liver Health and DiseaseP20GM103549 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI JAESCHKE, HARTMUT W. · 2012 to 2015
$8.1M
Pilot ProjectP20AA017837 · NIAAA · CLEVELAND CLINIC LERNER COM-CWRU · PI GHOLAM, PIERRE MICHEL · 2009 to 2013
$2.2M
Liver fibrosis and ethanol: role of the transcription factor, Egr-1R00AA017918 · NIAAA · UNIVERSITY OF KANSAS MEDICAL CENTER · PI PRITCHARD, MICHELE T · 2011 to 2013
$721k
Liver fibrosis and ethanol: role of the transcription factor, Egr-1K99AA017918 · NIAAA · CLEVELAND CLINIC LERNER COM-CWRU · PI PRITCHARD, MICHELE T · 2009 to 2010
$217k
Role of Butyrate in the Gut-Liver Interaction of Ethanol Induced Liver InjuryF32AA021044 · NIAAA · CLEVELAND CLINIC LERNER COM-CWRU · PI CRESCI, GAIL ANN · 2011 to 2013
$155k
Howard Hughes Medical InstituteNIAAA NIH HHS 1F32AA021044-02NIAAA NIH HHS F32 AA021044NIAAA NIH HHS K99 AA017918NIAAA NIH HHS P20 AA017837NIAAA NIH HHS P20AA017837NIAAA NIH HHS P20AA017918NIAAA NIH HHS R00 AA017918NIGMS NIH HHS 8P20GM103549-07
6 · The paper itself

Abstract

backgroundBecause the histological and biochemical progression of liver disease is similar in alcoholic steatohepatitis (ASH) and nonalcoholic steatohepatitis (NASH), we hypothesized that the genetic susceptibility to these liver diseases would be similar. To identify potential candidate genes that regulate the development of liver fibrosis, we studied a chromosome substitution strain (CSS-17) that contains chromosome 17 from the A/J inbred strain substituted for the corresponding chromosome on the C57BL/6J (B6) genetic background. Previously, we identified quantitative trait loci (QTLs) in CSS-17, namely obesity-resistant QTL 13 and QTL 15 (Obrq13 and Obrq15, respectively), that were associated with protection from diet-induced obesity and hepatic steatosis on a high-fat diet.

methodsTo test whether these or other CSS-17 QTLs conferred resistance to alcohol-induced liver injury and fibrosis, B6, A/J, CSS-17, and congenics 17C-1 and 17C-6 were either fed Lieber-DeCarli ethanol (EtOH)-containing diet or had carbon tetrachloride (CCl4 ) administered chronically.

resultsThe congenic strain carrying Obrq15 showed resistance from alcohol-induced liver injury and liver fibrosis, whereas Obrq13 conferred susceptibility to liver fibrosis. From published deep sequencing data for chromosome 17 in the B6 and A/J strains, we identified candidate genes in Obrq13 and Obrq15 that contained single-nucleotide polymorphisms (SNPs) in the promoter region or within the gene itself. NADPH oxidase organizer 1 (Noxo1) and NLR family, CARD domain containing 4 (Nlrc4) showed altered hepatic gene expression in strains with the A/J allele at the end of the EtOH diet study and after CCl4 treatment.

conclusionsAspects of the genetics for the progression of ASH are unique compared to NASH, suggesting that the molecular mechanisms for the progression of disease are at least partially distinct. Using these CSSs, we identified 2 candidate genes, Noxo1 and Nlrc4, which modulate genetic susceptibility in ASH.

Indexed as

Adaptor Proteins, Signal TransducingAnimalsApoptosis Regulatory ProteinsCalcium-Binding ProteinsCells, CulturedChromosomes, Human, Pair 17Fatty LiverFatty Liver, AlcoholicFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHumansMiceMice, CongenicMice, Inbred C57BLNon-alcoholic Fatty Liver DiseaseAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsCalcium-Binding ProteinsIpaf protein, mouseNoxo1 protein, mouseProteinsA/JC57BL/6JCCl4Congenic StrainsLiver FibrosisNlrc4 Inflammasome

Identifiers

PMID23763294
PMCPMC3796136
OpenAlexW2002622137

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.